User: allyson1115ar

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3 years ago
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Posts by allyson1115ar

<prev • 38 results • page 1 of 4 • next >
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Comment: C: How to slice or trim DNA sequence when it encounters NNNN or letters that repres
... This is indeed very helpful. Thanks. ...
written 3.1 years ago by allyson1115ar20
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How to slice or trim DNA sequence when it encounters NNNN or letters that represent ambiguity in the sequence?
... How can I slice DNA sequence whenever NNN occurs and also letters that represent ambiguity? is there any available software tools I can use to do so? For example: '>chr1:0-45 ATCGCTAGCTAGCTRCGAGCGTAGCNNNNNNCGATCGATCGATCAG into '>chr1:0-13 ATCGCTAGCTAGCT '>chr1:15-24 CGAGCGTAGC ' ...
genome fasta tools sequence software written 3.1 years ago by allyson1115ar20 • updated 2.3 years ago by Biostar ♦♦ 20
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Maker Annotation: How to put multiple HMM mod file in maker_opts.ctl?
... I would like to know how to write the command that takes multiple gmhmm mod file in maker? An example of command that takes a single mod file is as such: gmhmm=../train_genemark/es.mod #GeneMark HMM file According to this link: http://weatherby.genetics.utah.edu/MAKER/wiki/index.php/The_MAKER_con ...
annotation prediction hmm genemark maker written 3.4 years ago by allyson1115ar20
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Comment: C: Where can I download HMM profile for different species?
... the 3 species in my question ...
written 3.4 years ago by allyson1115ar20
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Comment: C: Where can I download HMM profile for different species?
... i would like to include the hmm in snap ab initio gene predictor since the package doesn't provide the other species ...
written 3.4 years ago by allyson1115ar20
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Comment: C: Where can I download HMM profile for different species?
... I can't find any hmm link to download the above 3 species :/ ...
written 3.4 years ago by allyson1115ar20
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Where can I download HMM profile for different species?
... I would like to ask is there any database allow me to download HMM for different species such as: 1. Pan troglodytes 2. Pongo abelii 3. Rhinopithecus rexellana ...
species profile sequence hmm genome written 3.4 years ago by allyson1115ar20
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Comment: C: Where can I download hg18.fa that includes all chromosomes?
... After I clicked 'full dataset', the only way for me to get hg18.fa is by downloading hg18.2bit and use twoBitToFa to convert to hg18.fa right? is there any link allow me to straight away download the hg18.fa without doing the conversion from twoBitToFa? thanks for your advice ...
written 3.5 years ago by allyson1115ar20
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Where can I download hg18.fa that includes all chromosomes?
... In UCSC genome browser, the hg18 provided is not in one fasta file. They provide file to download for each chromosomes. May I know where can I download a hg18 complete fasta file that include all chromosomes? Thanks. ...
genome fasta hg18 chromosome written 3.5 years ago by allyson1115ar20 • updated 3.5 years ago by Selenocysteine560
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How to get H3K4me1 FASTA file using UCSC genome browser?
... I have H3K4me1 bed file that I would like to obtain its sequence using UCSC genome browser. There are many options provided. I'm using the following options: clade: mammal, genome: human, assembly: hg18, group: ?, track: ? May I know what should I select for the group and track options? thanks. ...
ucsc sequence chip-seq histone written 3.6 years ago by allyson1115ar20

Latest awards to allyson1115ar

Popular Question 3.4 years ago, created a question with more than 1,000 views. For How to use Bed file to extract sequence from FASTA file?
Popular Question 3.6 years ago, created a question with more than 1,000 views. For How to use Bed file to extract sequence from FASTA file?
Popular Question 4.0 years ago, created a question with more than 1,000 views. For How to use Bed file to extract sequence from FASTA file?

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