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1.9k
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How to read AlignACE result?
alignace motif-discovery tfbs
updated 2.6 years ago by 45k • written 10.0 years ago by ▴ 30
3
votes
3
replies
2.5k
views
How to slice or trim DNA sequence when it encounters NNNN or letters that represent ambiguity in the sequence?
fasta sequence genome
updated 2.1 years ago by 45k • written 8.7 years ago by ▴ 30
0
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0
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2.9k
views
Maker Annotation: How to put multiple HMM mod file in maker_opts.ctl?
annotation prediction hmm maker genemark
9.0 years ago by allyson1115ar ▴ 30
3
votes
9
replies
3.7k
views
Where can I download HMM profile for different species?
hmm profile species genome sequence
9.0 years ago by allyson1115ar ▴ 30
3
votes
3
replies
8.9k
views
How to solve “/usr/bin/perl: bad interpreter: Permission denied” when installing TF2DNA ?
cygwin tf2dna
updated 2.6 years ago by 45k • written 10.1 years ago by ▴ 30
0
votes
5
replies
5.8k
views
Where can I download hg18.fa that includes all chromosomes?
genome hg18 chromosome fasta
updated 9.1 years ago by ▴ 620 • written 9.1 years ago by ▴ 30
1
vote
1
reply
1.7k
views
How to get H3K4me1 FASTA file using UCSC genome browser?
ChIP-Seq sequence UCSC histone
9.1 years ago by allyson1115ar ▴ 30
0
votes
8
replies
3.1k
views
Problem in installing Maker
maker repeatmasker annotation
9.2 years ago by allyson1115ar ▴ 30
4
votes
8
replies
3.6k
views
How to get enhancer region from a single chromosome?
enhancer ucsc annotation chromosome RNA-Seq
updated 9.3 years ago by ★ 4.0k • written 9.3 years ago by ▴ 30
0
votes
1
reply
4.5k
views
How to use DeepBind?
ChIP-Seq prediction sequence software-error
updated 2.9 years ago by 45k • written 9.7 years ago by ▴ 30
1
vote
0
replies
2.4k
views
How to generate synthetic transcription factor binding sites (TFBS)?
profile tfbs genome fasta
updated 2.8 years ago by 45k • written 9.8 years ago by ▴ 30
0
votes
0
replies
1.8k
views
How to get negative control sequence that are not bound by transcription factor or non-TFBS in UCSC?
UCSC tfbs
updated 2.6 years ago by 45k • written 10.0 years ago by ▴ 30
0
votes
0
replies
1.7k
views
How to read position information in BioProspector, MDscan, and Weeder output?
mdscan bioprospector motif coordinate weeder
updated 2.7 years ago by 45k • written 10.0 years ago by ▴ 30
2
votes
2
replies
1.8k
views
How to obtain negative data in UCSC genome browser?
gene ucsc
updated 2.6 years ago by 45k • written 10.0 years ago by ▴ 30
1
vote
2
replies
5.3k
views
How to obtain predicted or lab-verified TFBS in UCSC Genome Browser?
TFBS gene ucsc
updated 2.6 years ago by 45k • written 10.1 years ago by ▴ 30
4
votes
7
replies
3.7k
views
How to extract short sequence from FASTA file with certain step size?
fasta alignment biopython sequence
updated 2.5 years ago by 45k • written 10.1 years ago by ▴ 30
5
votes
9
replies
15k
views
How to use Bed file to extract sequence from FASTA file?
ChIP-Seq fasta bed
updated 2.5 years ago by 45k • written 10.1 years ago by ▴ 30
0
votes
0
replies
1.9k
views
Biopython: How to extract coordinates in P-match result?
bed python biopython
updated 2.3 years ago by 45k • written 10.1 years ago by ▴ 30
2
votes
3
replies
5.2k
views
Bedtools: How to save output in Cygwin by creating a bed file?
bed alignment bedtools sequence
updated 2.5 years ago by 45k • written 10.2 years ago by ▴ 30
0
votes
8
replies
5.7k
views
Python: How to find coordinates of short sequences in a FASTA file?
fasta bed biopython sequence
updated 2.5 years ago by 45k • written 10.2 years ago by ▴ 30
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