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Posts by ejliaw
... The question of which binary up-down pattern best fits my time-series data was explored with StepMiner in Sahoo et al., "Extracting binary signals from microarray time-course data", Nucleic Acid Research (2006) 35 (11):3705-3712. http://nar.oxfordjournals.org/content/35/11/3705.long That paper used ...
What is Scheffé's test, and can post-hoc tests tell me in which time points a differential peak, from time series DNAse-seq data, had higher signal?
... I have DNase-seq data from 7 time points, 2 replicates for each time point (14 samples total). For each DNase-seq peak, I want to determine in which subset of time points the signal is significantly increased compared to the complement set of other time points. A related question would be to determi ...
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