User: raghus606

gravatar for raghus606
raghus60610
Reputation:
10
Status:
New User
Location:
United States
Last seen:
1 year, 2 months ago
Joined:
4 years, 5 months ago
Email:
r********@gmail.com

Posts by raghus606

<prev • 10 results • page 1 of 1 • next >
0
votes
1
answer
880
views
1
answers
Comment: C: Ensembl 86 annotations with SnpEff for GRCh37
... Yea that seems like the problem. We aligned using hs37d5 (build 37 with decoys) , the warning seems to indicate that the release 86 reference file is different to this, which is a little confusing since my assumption was that all build37s reference files should be the same atleast for the autosomal, ...
written 2.8 years ago by raghus60610
0
votes
1
answer
880
views
1
answers
Comment: C: Ensembl 86 annotations with SnpEff for GRCh37
... No, I was looking for a way to get ensembl release 86 for GRCh37 to work correctly with SNPEff. ...
written 2.8 years ago by raghus60610
2
votes
1
answer
880
views
1
answer
Ensembl 86 annotations with SnpEff for GRCh37
... Hello Folks, Has anyone successfully managed to Annotate using a newer Ensembl annotation database with SNPEff ? It seems the last prebuilt database for GrCh37 with SNPEff is 75. We followed the insturctions on SNPEff's website and built the database with ensembl release 86 (ftp://ftp.ensembl.org ...
variant annotation written 2.8 years ago by raghus60610 • updated 2.8 years ago by Abdul Rafay Khan1.0k
0
votes
1
answer
890
views
1
answers
Comment: C: M.Phil Program in Bioinformatics
... Look at how other people structure their posts for open PhD/Research positions, this was a highly unprofessional post and so are quite a lot of the other posts by Indian Univeristies for admissions and being from India I feel strongly about this.   ...
written 4.0 years ago by raghus60610
0
votes
1
answer
890
views
1
answers
Answer: A: M.Phil Program in Bioinformatics
... Why do you geniuses always f things up for India with these shitty posts ? ...
written 4.0 years ago by raghus60610
0
votes
2
answers
1.5k
views
2
answers
Comment: C: BLASR/Bowtie2 short alignments
... I have used BLAT for aligning long Pacbio reads to reference genomes, I have also obtained good results when I was aligning 150 b.p illumina reads to particular portions of the genome ...
written 4.3 years ago by raghus60610
0
votes
2
answers
1.5k
views
2
answers
Answer: A: BLASR/Bowtie2 short alignments
... You could give it a try with BLAT, either way (Primer vs Reads or Reads vs Primer) should be fine, you will only need to filter the data differently. ...
written 4.3 years ago by raghus60610
0
votes
1
answer
1.1k
views
1
answers
Comment: A: Getting Bedtools Error
... Thank You that seemed to do the trick, there was indeed a space. I was doing print chr,"\t",start,"\t",stop while generating it in python, changing it to print chr+"\t"+start+"\t"+stop fixed it. ...
written 4.4 years ago by raghus60610
3
votes
1
answer
1.1k
views
1
answer
Getting Bedtools Error
... Hello Everyone, I am trying to run bedtools intersect to find which genes are present in each of the locations I have in a bed file. No matter what i do i get an error like : Error: unable to open file or unable to determine types for file temp.bed. I was trying to intersect with a bed file from ...
bedtools written 4.4 years ago by raghus60610
0
votes
0
answers
1.4k
views
0
answers
CNV analysis using CN.MOPS
... Hello Everyone, Has anyone used CN.MOPS for CNV analysis ? If so, how do you get it to recognize your genomic loci coming from separate chromosomes ? I read the paper and it seems the authors have used one simulated data as coming from one long artificial chromosome and the other data set consisted ...
next-gen cnv snp written 4.4 years ago by raghus60610

Latest awards to raghus606

Popular Question 17 months ago, created a question with more than 1,000 views. For CNV analysis using CN.MOPS

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 2418 users visited in the last hour