User: pedereri

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pedereri0
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Posts by pedereri

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Comment: C: How to use cxb files from cuffquant in cuffdiff?
... Well I found this link ​https://groups.google.com/forum/#!searchin/tuxedo-tools-users/cuffdiff$20killed/tuxedo-tools-users/6c8U6-eJ2sg/mjeu1FltdioJ But it doesnt really help There wasnt any fix Is there another link that you are thinking of?   ...
written 4.0 years ago by pedereri0
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Comment: C: How to use cxb files from cuffquant in cuffdiff?
... Well I got to "Testing for differential expression and regulation in locus" and then the process was killed after 8%.... Could it be that my computer is not powerful enough? ...
written 4.0 years ago by pedereri0
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Comment: A: How to use cxb files from cuffquant in cuffdiff?
... Ok thanks for that..I am running it now...(taking a long time) ...
written 4.0 years ago by pedereri0
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How to use cxb files from cuffquant in cuffdiff?
... Hi I am trying to first use the cuffquant tool before using cuffdiff, but when I try to use the cxb files from cuffquant in cuffdiff I get this error message: Error: cuffdiff requires at least 2 SAM files I read that it was possible to use the cuffquant files in cuffdiff, but there is no examples ...
cxb cuffdiff error cuffquant written 4.0 years ago by pedereri0
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Comment: A: cuffmerge error: IOError: [Errno 2] No such file or directory: '\xe2\x80\x93g'
... ....Wow, ok thanks, I would have never seen that. I just ran it and it worked Cheers ...
written 4.0 years ago by pedereri0
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Comment: A: cuffmerge error: IOError: [Errno 2] No such file or directory: '\xe2\x80\x93g'
... That doesn't seem to do anything. I had quotation marks when I was using both Tophat and cufflinks, but I didn't get an error ...
written 4.0 years ago by pedereri0
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Comment: A: cuffmerge error: IOError: [Errno 2] No such file or directory: '\xe2\x80\x93g'
... I guess i should say I am using cufflinks-2.2.1.Linux_x86_64 on linux mint 17 ...
written 4.0 years ago by pedereri0
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cuffmerge error: IOError: [Errno 2] No such file or directory: '\xe2\x80\x93g'
... Hi I am trying to run cuffmerge in Linux mint directly from the program script instead of installing, since I cannot figure out how to install the correct version on Linux mint (./cuffmerge.....). When I sudo apt-get install cuffmerge, I get a very outdated version, so this is my fix, which has wor ...
cuffmerge linuxmint errno 2 ioerror written 4.0 years ago by pedereri0

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