User: robin.vanvelzen.wur

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Posts by robin.vanvelzen.wur

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Comment: C: kmergenie does not show all k-mers in diploid mode
... Thanks for the help and the advice! Heterozygosity is indeed low (that was one of the criteria to select the sample for sequencing). So if I understand correctly, the diploid model requires a substantial level of heterozygosity to work. It may be good to mention that requirement in the documentatio ...
written 2.5 years ago by robin.vanvelzen.wur0
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kmergenie does not show all k-mers in diploid mode
... Dear all,  I am trying out kmergenie to determine optimal kmer values for plant genome assembly. Using the default settings I get a nice histogram for all the different k-mers, but using the --diploid parameter the histogram is truncated. See .dat outputs below.  It seems that many of the k-mer hi ...
kmergenie written 2.5 years ago by robin.vanvelzen.wur0 • updated 2.5 years ago by Rayan Chikhi1.2k

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