User: waqas.ahmad5231

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Posts by waqas.ahmad5231

<prev • 6 results • page 1 of 1 • next >
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Comment: C: How to Design Exome Sequencing study?
... Today I know from them that it is Exome sequencing (mean 40x, agilent v4, HiSeq). They will give me *.bam and *.vcf files. What would you say that in this situation the sample size of 100 cases and 100 control would be sufficient? Which software would be useful for this purpose? ...
written 3.5 years ago by waqas.ahmad52310
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Comment: C: How to Design Exome Sequencing study?
... Thanks for your comments. More specifically I am interested in type 2 diabetes. I know the PLINK software, but I have no idea how this array-based genotyping data look like? Is it compatible with PLINK format? ...
written 3.5 years ago by waqas.ahmad52310
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How to Design Exome Sequencing study?
... I am planning to analyse exome sequencing data. I am expecting data from the platform Illumina Infinium Human Exome-12 BeadChip.  I am basically statistician and have an interest in bioinformatics. I am designing a case-control study, where 100 cases of diabetes and 100 as control (no diabetes). I ...
genome sequencing written 3.5 years ago by waqas.ahmad52310
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Comment: C: Installing BioLinux 8 on Ubuntu 15.04
... It means Bio-linux is not supported for vivid? If this the case, then what will the solution? ...
written 4.0 years ago by waqas.ahmad52310
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Comment: C: Installing BioLinux 8 on Ubuntu 15.04
... yes, it is connected to wireless network. ...
written 4.0 years ago by waqas.ahmad52310
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Installing BioLinux 8 on Ubuntu 15.04
... I am new to Linux environment. I am trying to install Bio Linux 8 on Ubuntu 15.04, but it is giving problem;   By using following command; wget -qO- http://nebc.nerc.ac.uk/downloads/bl8_only/upgrade8.sh | sudo sh   W: Failed to fetch http://ppa.launchpad.net/nebc/bio-linux/ubuntu/dists/vivid/ma ...
ubuntu biolinux written 4.0 years ago by waqas.ahmad52310

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