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1
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3
replies
1.7k
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Beagle 5 error: No VCF records found in the specified interval
Imputation VCF Beagle PLINK
2.5 years ago by aritra90 ▴ 70
0
votes
0
replies
905
views
Discussion on abundance of trans-eQTLs and almost no cis-eQTLs
RNA-Seq SNP gene eqtl gene expression
4.2 years ago by aritra90 ▴ 70
0
votes
0
replies
1.0k
views
Genome Inflation factor for genomic control too large
genomics gwas SNP plink stratification
4.9 years ago by aritra90 ▴ 70
7
votes
6
replies
5.0k
views
EIGENSOFT : Ploteig, 3D Plots
EIGENSOFT SNP PCA PLOT
updated 16 months ago by 43k • written 8.8 years ago by ▴ 70
3
votes
1
reply
2.2k
views
How to force missing values for genotype?
plink genotypes SNP
updated 5.1 years ago by 11k • written 5.1 years ago by ▴ 70
1
vote
3
replies
2.8k
views
Prune SNPs in LD with a list of SNPs
SNP plink LD
5.5 years ago by aritra90 ▴ 70
8
votes
15
replies
7.7k
views
6 follow
Beagle 4.1 error : Possible data conversion issue
VCF PLINK SNP BEAGLE
updated 20 months ago by 43k • written 8.4 years ago by ▴ 70
0
votes
0
replies
1.8k
views
Merging a PLINK file with itself after duplicating sampleIDs and rsIDs
SNP PLINK genotype merging
6.9 years ago by aritra90 ▴ 70
0
votes
3
replies
1.8k
views
Maximum amount of data that smartPCA program can process?
genotype eigensoft smartpca pca SNP
6.9 years ago by aritra90 ▴ 70
0
votes
0
replies
1.4k
views
Merging data with b37 and hg19
SNP PLINK genome
7.5 years ago by aritra90 ▴ 70
0
votes
5
replies
2.6k
views
PLINK --within flag not clustering all of the samples
PLINK genotype clustering treemix
7.6 years ago by aritra90 ▴ 70
1
vote
5
replies
8.9k
views
PLINK: removing SNPs missing in all samples
PLINK SNP
updated 20 months ago by 43k • written 8.5 years ago by ▴ 70
9
votes
4
replies
6.1k
views
EIGENSOFT: CONVERTF ignoring samples
EIGENSOFT PLINK convertf
updated 20 months ago by 43k • written 8.4 years ago by ▴ 70
4
votes
2
replies
7.9k
views
PLINK Merge error: File write failure
plink 1000genomes
updated 19 months ago by 43k • written 8.5 years ago by ▴ 70
3
votes
6
replies
3.7k
views
Allelic Distance calculation using PED format data
python Allele plink SNP genome
updated 18 months ago by 43k • written 8.7 years ago by ▴ 70
0
votes
0
replies
2.7k
views
Understanding AWClust's SNP file data format and converting a PED file to it
plink allele SNP ped
updated 18 months ago by 43k • written 8.7 years ago by ▴ 70
0
votes
1
reply
2.1k
views
Converting Behar et al. dataset from GEO to PLink format
next-gen illumina SNP Population-Genetics PLINK
updated 19 months ago by 43k • written 8.8 years ago by ▴ 70
3
votes
5
replies
7.4k
views
Compare consecutive columns of a file and return the number of non-matching elements
Haplotype Beagle Python
updated 15 months ago by 43k • written 8.9 years ago by ▴ 70
0
votes
3
replies
2.7k
views
Compare consecutive columns of a phased Beagle file to generate the number of elements that matches.
beagle bash awk shell
updated 15 months ago by 43k • written 8.9 years ago by ▴ 70
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