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answers
1
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371
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Answer:
Answer: How can I get the sequences of the first 20nt of introns and the last 250nt of i
8 weeks ago by
harold.smith.tarheel
★ 4.9k
2
votes
0
replies
708
views
Answer:
Answer: BBtools bug in reporting the number of substitutions in the console output, it s
4 months ago by
harold.smith.tarheel
★ 4.9k
0
votes
1
reply
568
views
Answer:
Answer: Identification of transgene insertion site using Illumina DNA Sequencing
7 months ago by
harold.smith.tarheel
★ 4.9k
1
vote
0
replies
475
views
Answer:
Answer: VCF file format
16 months ago by
harold.smith.tarheel
★ 4.9k
2
votes
0
replies
695
views
Answer:
Answer: Generating synthetic TB reads
18 months ago by
harold.smith.tarheel
★ 4.9k
0
votes
0
replies
634
views
Answer:
Answer: How to search the human genome for sequences that differ from a given sequence b
updated 22 months ago by
GenoMax
141k • written 22 months ago by
harold.smith.tarheel
★ 4.9k
3
votes
1
reply
2.7k
views
Answer:
Answer: Extract reads overlapping a specific region in bam file
2.9 years ago by
harold.smith.tarheel
★ 4.9k
0
votes
1
reply
706
views
Answer:
Answer: Annovar Exonic label
3.0 years ago by
harold.smith.tarheel
★ 4.9k
1
vote
0
replies
787
views
Answer:
A: Filter only SNPs in 1000 Genomes Data Slicer
3.4 years ago by
harold.smith.tarheel
★ 4.9k
0
votes
0
replies
3.4k
views
Answer:
A: GATK VariantFiltration does not filter
3.6 years ago by
harold.smith.tarheel
★ 4.9k
0
votes
1
reply
997
views
Answer:
A: comparison of variants between WGS samples
3.6 years ago by
harold.smith.tarheel
★ 4.9k
1
vote
0
replies
3.0k
views
Answer:
A: Tools to filter the heterozygous SNPs with biased allele depth (AD) values in vc
4.3 years ago by
harold.smith.tarheel
★ 4.9k
2
votes
0
replies
4.0k
views
Answer:
A: Where can I do an online project to get some hands on experience with NGS data a
updated 4.3 years ago by
Ram
43k • written 8.2 years ago by
harold.smith.tarheel
★ 4.9k
1
vote
1
reply
3.7k
views
Answer:
A: Automating pre-alignment (and post-alignment) quality control
updated 4.3 years ago by
Ram
43k • written 8.2 years ago by
harold.smith.tarheel
★ 4.9k
0
votes
0
replies
3.7k
views
Answer:
A: How can I compare two columns of a two VCF files
updated 4.3 years ago by
Ram
43k • written 8.3 years ago by
harold.smith.tarheel
★ 4.9k
7
votes
0
replies
16k
views
Answer:
A: How do I explain to my non-bioinformatician labmates how to interpret principal
updated 4.3 years ago by
Ram
43k • written 8.3 years ago by
harold.smith.tarheel
★ 4.9k
0
votes
2
replies
4.9k
views
Answer:
A: Reference Genome of Saccharomyces cerevisiae S288C.
updated 4.4 years ago by
Ram
43k • written 8.4 years ago by
harold.smith.tarheel
★ 4.9k
0
votes
1
reply
20k
views
Answer:
A: Error when trying to use samtools to convert a sam files to a bam file
updated 4.4 years ago by
Ram
43k • written 8.4 years ago by
harold.smith.tarheel
★ 4.9k
4
votes
2
replies
5.0k
views
Answer:
A: Varying Sample Size vs Read Depth, Read Length, and Single vs Paired end to opti
updated 4.4 years ago by
Ram
43k • written 8.4 years ago by
harold.smith.tarheel
★ 4.9k
1
vote
0
replies
4.4k
views
Answer:
A: Picard Error with SAM File
updated 4.4 years ago by
Ram
43k • written 8.4 years ago by
harold.smith.tarheel
★ 4.9k
0
votes
0
replies
1.6k
views
Answer:
A: in bcftools mpileup output, the DP number is not equal to depth in I16 tag
4.4 years ago by
harold.smith.tarheel
★ 4.9k
1
vote
0
replies
3.8k
views
Answer:
A: High Kmer Content in middle of the read
updated 4.4 years ago by
Ram
43k • written 8.4 years ago by
harold.smith.tarheel
★ 4.9k
0
votes
1
reply
3.0k
views
Answer:
A: bcl to fastq Conversion
updated 4.4 years ago by
Ram
43k • written 8.5 years ago by
harold.smith.tarheel
★ 4.9k
3
votes
0
replies
3.0k
views
Answer:
A: Per base sequence quality before and after truseq adapters removal
updated 4.4 years ago by
Ram
43k • written 8.5 years ago by
harold.smith.tarheel
★ 4.9k
3
votes
2
replies
3.9k
views
Answer:
A: Database for C. elegans TFBS
updated 4.4 years ago by
Ram
43k • written 8.5 years ago by
harold.smith.tarheel
★ 4.9k
4
votes
1
reply
1.7k
views
Answer:
A: Interpreting bbduk histogram headers and contents
4.4 years ago by
harold.smith.tarheel
★ 4.9k
3
votes
2
replies
3.8k
views
Answer:
A: Extract sequences based on keywords in headers (no perl or python code)
updated 4.4 years ago by
Ram
43k • written 8.6 years ago by
harold.smith.tarheel
★ 4.9k
3
votes
1
reply
1.1k
views
Answer:
A: The same location shares different GeneBank Accession in IGV and UCSC?
4.5 years ago by
harold.smith.tarheel
★ 4.9k
1
vote
1
reply
4.9k
views
Answer:
A: Why are there many reads with green color in IGV of RNA-seq data?
4.8 years ago by
harold.smith.tarheel
★ 4.9k
0
votes
0
replies
2.0k
views
Answer:
A: targets in a bed at or above a coverage
4.8 years ago by
harold.smith.tarheel
★ 4.9k
0
votes
2
replies
4.5k
views
Answer:
A: NGS Data storage solutions for small organisations or big labs
4.9 years ago by
harold.smith.tarheel
★ 4.9k
0
votes
0
replies
2.5k
views
Answer:
A: Keeping only common variants in the merged VCF file
4.9 years ago by
harold.smith.tarheel
★ 4.9k
2
votes
1
reply
1.3k
views
Answer:
A: Efficent Estimation of Sequencing Coverage
5.2 years ago by
harold.smith.tarheel
★ 4.9k
3
votes
1
reply
7.5k
views
Answer:
A: bcftools doesn't normalize the vcf file
5.3 years ago by
harold.smith.tarheel
★ 4.9k
0
votes
0
replies
982
views
Answer:
A: Viral vector integration site detection tool
5.3 years ago by
harold.smith.tarheel
★ 4.9k
0
votes
1
reply
1.3k
views
Answer:
A: Missing sequence from a cosmid de novo assembly
5.4 years ago by
harold.smith.tarheel
★ 4.9k
0
votes
0
replies
1.2k
views
Answer:
A: Find unique non overlapping intervals between two files?
5.5 years ago by
harold.smith.tarheel
★ 4.9k
0
votes
1
reply
3.6k
views
Answer:
A: Combining snp and indel vcf files with GATK4
5.6 years ago by
harold.smith.tarheel
★ 4.9k
5
votes
0
replies
18k
views
Answer:
A: why PCA for RNA-Seq but tSNE for scRNA-seq?
5.9 years ago by
harold.smith.tarheel
★ 4.9k
0
votes
0
replies
4.5k
views
Answer:
A: Error in samtools view
6.1 years ago by
harold.smith.tarheel
★ 4.9k
0
votes
1
reply
2.2k
views
Answer:
A: What cigar to use to count reads with last base mismatch in Rsamtools?
6.2 years ago by
harold.smith.tarheel
★ 4.9k
0
votes
1
reply
2.1k
views
Answer:
A: How do we find the number of sequences with terminal mismatches?
6.2 years ago by
harold.smith.tarheel
★ 4.9k
5
votes
1
reply
2.7k
views
Answer:
A: look for sequences containing a specific motif
6.2 years ago by
harold.smith.tarheel
★ 4.9k
0
votes
0
replies
1.9k
views
Answer:
A: Gene distribution along the chromosomes
6.2 years ago by
harold.smith.tarheel
★ 4.9k
0
votes
1
reply
3.7k
views
Answer:
A: A very short gene with very high TPM
6.3 years ago by
harold.smith.tarheel
★ 4.9k
2
votes
1
reply
4.5k
views
Answer:
A: vcf files: counting number of variants in genomic windows of chosen size
6.4 years ago by
harold.smith.tarheel
★ 4.9k
2
votes
1
reply
2.8k
views
Answer:
C: Bedtools intersect returns 0, intersections present on IGV
6.4 years ago by
harold.smith.tarheel
★ 4.9k
2
votes
0
replies
1.9k
views
Answer:
A: Why "Motile sperm domain-containing protein 2" has nothing to do with "sperm"?
6.4 years ago by
harold.smith.tarheel
★ 4.9k
2
votes
0
replies
2.9k
views
Answer:
A: Nucleotide coverage if >5 reads
6.5 years ago by
harold.smith.tarheel
★ 4.9k
2
votes
1
reply
3.9k
views
Answer:
A: Is there any disease mainly caused by underexpression or overexpression of some
6.5 years ago by
harold.smith.tarheel
★ 4.9k
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