User: fungopoo

gravatar for fungopoo
fungopoo10
Reputation:
10
Status:
New User
Location:
South Africa
Last seen:
2 years ago
Joined:
2 years ago
Email:
f*******@gmail.com

Posts by fungopoo

<prev • 4 results • page 1 of 1 • next >
0
votes
1
answer
787
views
1
answers
Comment: C: Minia bug: max rehashes reached: 65536000 (notify a developer)
... hi, a final thanks, " Please try adding "-max-memory 4000" to the command line, this might fix it for now" this worked like a charm.  I have 16gb ram, quad-core 64 bit cpu, OSX 10.10 and it ran for 838 s; thanks for you advice and patience. ...
written 2.1 years ago by fungopoo10
1
vote
1
answer
787
views
1
answers
Answer: A: Minia bug: max rehashes reached: 65536000 (notify a developer)
... OK, Trying -max-memory 4000; if it crashes again I'll get the data to you. The data is low-coverage whole genome DNA, Illumina miseq platform. I used Galaxy to clean it up, join the paired ends and concatenate two separate runs.    ...
written 2.1 years ago by fungopoo10
0
votes
1
answer
787
views
1
answers
Comment: C: Minia bug: max rehashes reached: 65536000 (notify a developer)
... Hi, Thanks, yes 2.0.3 I used kmergenie to find kmer size, and then -abundance-min 3, I have subsequently re-run it and it still crashes. ...
written 2.1 years ago by fungopoo10
6
votes
1
answer
787
views
1
answer
Minia bug: max rehashes reached: 65536000 (notify a developer)
... Hi, Minia just crashed, error message reads, "[DSK: Pass 1/1, Step 2: counting kmers  ]  51.1 %   elapsed:   0 min 60 sec    estimated remaining:   0 min 57 sec   cpu:  760.5 %   mem: [ 127,  127,    0] MB EXCEPTION: OAHash: max rehashes reached: 65536000 (notify a developer)". Any suggestions as ...
assembly minia bug written 2.1 years ago by fungopoo10

Latest awards to fungopoo

No awards yet. Soon to come :-)

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 366 users visited in the last hour