User: garimav89

gravatar for garimav89
garimav890
Reputation:
0
Status:
New User
Last seen:
1 year, 7 months ago
Joined:
4 years, 6 months ago
Email:
g********@gmail.com

Profile information, website and location are not shown for new users.

This helps us discourage the inappropriate use of our site.

Posts by garimav89

<prev • 23 results • page 1 of 3 • next >
0
votes
0
answers
481
views
0
answers
Comment: C: cuffdiff error. IT hangs
... Yes I did try, but it wasn't working. But then I tried with -M option in cuffdiff and masked the human gtf file. It worked. Hence, It was inferred that human gtf file is having some problem. ...
written 19 months ago by garimav890
0
votes
0
answers
481
views
0
answers
Comment: C: cuffdiff error. IT hangs
... Thanku so much for this gesture. Actually I have troubleshooted this problem a lot, still cant find the solution ...
written 19 months ago by garimav890
7
votes
0
answers
481
views
6 follow
0
answers
cuffdiff error. IT hangs
... Hi, My cuffdiff is hanging everytime, im trying to run at this point: [11:02:35] Inspecting maps and determining fragment length distributions. My command is ./cuffdiff -o cuffdiff_data2 \ -b ../../RNA/Ref_transcriptome/index/Homo_sapiens.GRCh37.75.cdna.all.fa \ ...
rna-seq written 19 months ago by garimav890 • updated 19 months ago by RamRS25k
0
votes
0
answers
2.1k
views
0
answers
Comment: C: error installing cummerbund in R studio
... but how should I select the zip file and then install it. please help?? ...
written 2.1 years ago by garimav890
0
votes
1
answer
2.7k
views
1
answers
Comment: C: .txt format file in GEO
... Actually I'm also facing same problem. I have .txt files or soft files. How did you normalize soft files or .txt files. Please reply. ...
written 2.8 years ago by garimav890
0
votes
0
answers
1.1k
views
0
answers
Normalization of non-normalized .txt data from GEO
... I have downloaded a non-normalized .txt file from GEO and now want to do median and quantile normalization and background normalization of this data. My .txt file looks like this: ID_REF 1A 1B 2A 2B hsa-miR-199b-3p 328 1532 1136 288 hsa-miR-302c -88 -44 -104 -136 hsa-miR-499 ...
R microarray written 2.9 years ago by garimav890
0
votes
1
answer
817
views
1
answer
variant analysis and filtering from annotation file
... I have a annotation.txt file like this : chr1 34567 A chr2 12345 C chr14 14567 T chr15 32456 A I want to extract data of chr1 only. I'm using following command: awk '$1 ~/chr1/' annotation.txt > chr1.txt But it is giving me results for chr11, chr12 , chr13, chr14, chr15, chr16, chr17, chr18 ...
R snp written 3.0 years ago by garimav890 • updated 3.0 years ago by a1.gough0
6
votes
3
answers
2.3k
views
3
answers
Whole exome sequencing using Bowtie
... What is the best pipeline for Whole exome sequencing data analysis using Bowtie? Are there any scripts available? ...
assembly next-gen snp sequencing written 3.2 years ago by garimav890 • updated 3.2 years ago by vakul.mohanty240
0
votes
0
answers
1.1k
views
0
answers
Tutorial: MD simulation of GPCR
... Hey , I have some missense mutation in a GPCR-Family C receptor which I have modelled. Now I want to perform MD-simulations on these models.  Since I don't have any chemistry background, I need some effective protocols and guidelines to go through the simulations. Please help Thanks ...
protein tutorial modelling snp written 3.9 years ago by garimav890
0
votes
0
answers
1.6k
views
0
answers
RMSD for predictive protein structures
... I prepared a native structure of my protein from iTasser since it did not have a crystal structure. The length of the protein is >1000. Next I inserted a single amino acid mutation in it and again modelled through itasser. The mutated structure is completely different. When I checked the RMSD for ...
protein written 4.0 years ago by garimav890

Latest awards to garimav89

Popular Question 2.1 years ago, created a question with more than 1,000 views. For Protein Molecular modeling online tutorials/books for beginners
Popular Question 3.2 years ago, created a question with more than 1,000 views. For Protein Molecular modeling online tutorials/books for beginners

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1840 users visited in the last hour