User: nicolas.dussex

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30
Status:
New User
Location:
New Zealand
Last seen:
1 month, 2 weeks ago
Joined:
4 years, 6 months ago
Email:
n*************@gmail.com

Posts by nicolas.dussex

<prev • 4 results • page 1 of 1 • next >
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Answer: A: Variant Effect Predictor parameters for custom gff and fasta
... Hi R.Blues, Did you manage to fix your issue? I am trying to do the same but I am having issues creating the cache and I think that it is due to the fact that my annotation has gene, mRNA, CDSs but not exons. Cheers, Nic ...
written 18 months ago by nicolas.dussex30
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replace headers in a fasta file
... Hi, I would like to replace the first filed my headers in my fasta file and concatenate it to the 2nd field (my gene ID), such a, I start with this: > maker-scaffold_0-snap-gene-0.23-mRNA-1 gene=maker-scaffold_0-snap-gene-0.23 ATGGTGAAGCTCGTGGCGTTCTCGCCGTTCCGCTCGGCGCAGAGCGCGCTGGAGAACATGAACGCCG ...
fasta header replace written 4.2 years ago by nicolas.dussex30 • updated 4.2 years ago by venu6.3k
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Test of selection across whole genomes
... Hi, I have a question regarding test of selection in PAML using full genomes. My dataset contains multiple individuals (2 to 8) for the 6 different species (A to F). For the analysis, I have two species (A and B) that have their genome annotated. The idea is two run the analysis twice, first using ...
paml selection written 4.2 years ago by nicolas.dussex30 • updated 3.7 years ago by ragavishn20
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Lositan freezing after starting the analysis
... Hi everyone,   I am trying to run Lositan for 2 populations with n=100 or so and 17,000 SNP loci. For some reason Lositan freezes at this stage: "First simulation pass to determine neutral set". Any idea why and how I could sort it out? I am running it on a Mac.   Cheers Nic ...
lositan written 4.5 years ago by nicolas.dussex30

Latest awards to nicolas.dussex

Popular Question 4 months ago, created a question with more than 1,000 views. For replace headers in a fasta file
Popular Question 15 months ago, created a question with more than 1,000 views. For replace headers in a fasta file
Popular Question 4.0 years ago, created a question with more than 1,000 views. For Test of selection across whole genomes

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