User: fbesnard

gravatar for fbesnard
fbesnard30
Reputation:
30
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New User
Location:
France
Last seen:
1 year, 11 months ago
Joined:
2 years, 3 months ago
Email:
f*******@biologie.ens.fr

Posts by fbesnard

<prev • 12 results • page 1 of 2 • next >
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Answer: A: Problem to install Breakdancer on Mac OS X
... Hi, After a long pause, I'm getting back to this issue... without success. I did what Ernfrid suggested, which is sudo port select --set gcc none. To sum up, here is what I did after: 1)rm -rf breakdancer then git clone --recursive https://github.com/genome/breakdancer.git 2) Create "build" fo ...
written 24 months ago by fbesnard30
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Answer: A: Pb to Compile Pindel on MacOs x
... Hi,   I add to pause with this, but I just went back to it after three months... Finally it worked. I did as suggested by John: ./INSTALL /mypathto/samtools-1.2/htslib-1.2.1 The reason why it was not working is that I realized I had to deleted the pindel folder after each failed compilation. ...
written 24 months ago by fbesnard30
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Comment: C: Problem to install Breakdancer on Mac OS X
... Hi Ernfrid,   Excuse-me, I haven't tried yet: I had to pause this job to deal with others urgent things. I drop you a reply as soon as I get back to this (next week I guess). Thank you very much for your help anyway, I really appreciate your feedback ! ...
written 2.3 years ago by fbesnard30
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Comment: C: Problem to install Breakdancer on Mac OS X
... Hi Ernfrid, Yes I installed gcc49 as suggested by Ram. breakdancer was compiling using it, as said during the progress: The CXX compiler identification is GNU 4.9.2 -- The C compiler identification is GNU 4.9.2 And when I type: gcc --version, I get: gcc (MacPorts gcc49 4.9.2_2) 4.9.2 Copyrigh ...
written 2.3 years ago by fbesnard30
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Comment: C: Problem to install Breakdancer on Mac OS X
... Hi before each new trial, I remove the breakdancer folder (rm -rf breakdancer) and I re-download it from github (git clone --recursive https://github.com/genome/breakdancer.git). Do you think I should do something else ? Are there other files created somewhere else that I should remove ?   ...
written 2.3 years ago by fbesnard30
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Comment: C: Problem to install Breakdancer on Mac OS X
... Hi Ernfrid, Hey, there is improvement ! It is still failing, but it goes further in the compilation. Again, It started it all from scratch, and I compile in 2 steps as you suggested before (make deps and then make) 1st step works fine, and during the 2nd: -I get 1 warning at [63%]: [ 63%] Build ...
written 2.3 years ago by fbesnard30
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Comment: C: Problem to install Breakdancer on Mac OS X
... Hi Ernfrid,   I really believed it would work this time... but it ended up with the same crash. namely, make deps  worked well but then  make failed at the same step again: Scanning dependencies of target breakdancer [ 43%] Building CXX object build/src/lib/breakdancer/CMakeFiles/breakdancer.d ...
written 2.3 years ago by fbesnard30
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Comment: C: Problem to install Breakdancer on Mac OS X
... Hi Ram, Thank you for feed back. I installed gcc49 via MacPorts, and set it as the active compiler. Then I deleted my previous breakdancer folder and re-started all the installation from scratch, but it fails again at the same point (STEP=scanning dependencies of target breakdancer): $make Scann ...
written 2.3 years ago by fbesnard30
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Problem to install Breakdancer on Mac OS X
... I am running Mac OS X 10.9.5. I'm struggling to install Breakdancer. I installed cmake (3.2.3) as required, with the command line option activated (symlink in my usr/bin/ folder) I started Breakdancer compilation as recommended: -1st step works fine ( cmake .. -DCMAKE_BUILD_TYPE=release -DCMAKE_ ...
mac os x breakdancer written 2.3 years ago by fbesnard30 • updated 22 months ago by Biostar ♦♦ 20
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Comment: C: Pb to Compile Pindel on MacOs x
... Quite sure, yes, I got it by automatic completion with the tab key. ...
written 2.3 years ago by fbesnard30

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