User: guillaume.gautreau44

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Posts by guillaume.gautreau44

<prev • 24 results • page 1 of 3 • next >
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Answer: A: How to perform docking with a library of molecules?
... You can use Autodock Vina : http://vina.scripps.edu/ ...
written 14 months ago by guillaume.gautreau44130
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Answer: A: Tools For Visualizing Rna-Seq Splicing Graphs From De Novo Assembly Without A Re
... I suggest : Bandage https://rrwick.github.io/Bandage/ ...
written 15 months ago by guillaume.gautreau44130
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Answer: A: What whole genome aligners are designed to work with contigs, not short reads, a
... MUMmer http://mummer.sourceforge.net/ ...
written 15 months ago by guillaume.gautreau44130
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Comment: C: LoRDEC : Compilation error
... Finnaly she resolved his problem in using gcc 4.9.2 and with adding gcc 4.9.2 path to CC and CXX. Thanks a lot ...
written 19 months ago by guillaume.gautreau44130
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Comment: C: LoRDEC : Compilation error
... I answer for Carob because she reached her number of message limit per 6hours Finnaly she resolved his problem in using gcc 4.9.2 and with adding gcc 4.9.2 path to CC and CXX. Thanks a lot ...
written 19 months ago by guillaume.gautreau44130
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Answer: A: LoRDEC : Compilation error
... I answer for Carob because she reached her biostar number of message limit per 6hours She has removed the build directory and run `make clean` but she still has the same error message :  In file included from /env/cns/src/lordec/LoRDEC-0.5.3-Source/thirdparty/gatb-core/thirdparty/hdf5/src/H5make_l ...
written 19 months ago by guillaume.gautreau44130
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Comment: C: NaS (Nanopore Synthetic-long) help
... ok so use the script in my previous message to add /1 and /2 ...
written 21 months ago by guillaume.gautreau44130
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Comment: C: NaS (Nanopore Synthetic-long) help
... Do you have Illumina reads in pairs in 2 files ? delete  1:N:0:ACAGTG at the end and with a script awk add /1 or /2 For exemple :  cat r1.fastq | awk 'NR%4==1{printf ($1 "/1" "\n");}NR%4!=1{print $0;}' cat r2.fastq | awk 'NR%4==1{printf ($1 "/2" "\n");}NR%4!=1{print $0;}' ...
written 21 months ago by guillaume.gautreau44130
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Comment: C: NaS (Nanopore Synthetic-long) help
... NaS don't support space in fasta sequences identifiers to rename your fasta try :  cat your_sequences.fasta | NaS_v2/FastaToTbl | NaS_v2/TblToFasta > your_sequences_rename.fasta ...
written 21 months ago by guillaume.gautreau44130
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Comment: C: NaS (Nanopore Synthetic-long) help
... Yes you can. Pacbio file have often specials characters (like slash) in fasta sequences identifiers, try to rename it if you have problem. ...
written 21 months ago by guillaume.gautreau44130

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