User: guillaume.gautreau44

Reputation:
140
Status:
Trusted
Location:
France
Last seen:
1 year, 6 months ago
Joined:
2 years, 3 months ago
Email:
g*******************@gmail.com

Posts by guillaume.gautreau44

<prev • 24 results • page 1 of 3 • next >
1
vote
2
answers
559
views
2
answers
Answer: A: How to perform docking with a library of molecules?
... You can use Autodock Vina : http://vina.scripps.edu/ ...
written 20 months ago by guillaume.gautreau44140
1
vote
2
answers
3.3k
views
2
answers
Answer: A: Tools For Visualizing Rna-Seq Splicing Graphs From De Novo Assembly Without A Re
... I suggest : Bandage https://rrwick.github.io/Bandage/ ...
written 20 months ago by guillaume.gautreau44140
2
votes
2
answers
641
views
2
answers
Answer: A: What whole genome aligners are designed to work with contigs, not short reads, a
... MUMmer http://mummer.sourceforge.net/ ...
written 20 months ago by guillaume.gautreau44140
1
vote
2
answers
1.2k
views
2
answers
Comment: C: LoRDEC : Compilation error
... Finnaly she resolved his problem in using gcc 4.9.2 and with adding gcc 4.9.2 path to CC and CXX. Thanks a lot ...
written 2.1 years ago by guillaume.gautreau44140
1
vote
2
answers
1.2k
views
2
answers
Comment: C: LoRDEC : Compilation error
... I answer for Carob because she reached her number of message limit per 6hours Finnaly she resolved his problem in using gcc 4.9.2 and with adding gcc 4.9.2 path to CC and CXX. Thanks a lot ...
written 2.1 years ago by guillaume.gautreau44140
0
votes
2
answers
1.2k
views
2
answers
Answer: A: LoRDEC : Compilation error
... I answer for Carob because she reached her biostar number of message limit per 6hours She has removed the build directory and run `make clean` but she still has the same error message :  In file included from /env/cns/src/lordec/LoRDEC-0.5.3-Source/thirdparty/gatb-core/thirdparty/hdf5/src/H5make_l ...
written 2.1 years ago by guillaume.gautreau44140
0
votes
5
answers
1.5k
views
5
answers
Comment: C: NaS (Nanopore Synthetic-long) help
... ok so use the script in my previous message to add /1 and /2 ...
written 2.2 years ago by guillaume.gautreau44140
0
votes
5
answers
1.5k
views
5
answers
Comment: C: NaS (Nanopore Synthetic-long) help
... Do you have Illumina reads in pairs in 2 files ? delete  1:N:0:ACAGTG at the end and with a script awk add /1 or /2 For exemple :  cat r1.fastq | awk 'NR%4==1{printf ($1 "/1" "\n");}NR%4!=1{print $0;}' cat r2.fastq | awk 'NR%4==1{printf ($1 "/2" "\n");}NR%4!=1{print $0;}' ...
written 2.2 years ago by guillaume.gautreau44140
0
votes
5
answers
1.5k
views
5
answers
Comment: C: NaS (Nanopore Synthetic-long) help
... NaS don't support space in fasta sequences identifiers to rename your fasta try :  cat your_sequences.fasta | NaS_v2/FastaToTbl | NaS_v2/TblToFasta > your_sequences_rename.fasta ...
written 2.2 years ago by guillaume.gautreau44140
1
vote
5
answers
1.5k
views
5
answers
Comment: C: NaS (Nanopore Synthetic-long) help
... Yes you can. Pacbio file have often specials characters (like slash) in fasta sequences identifiers, try to rename it if you have problem. ...
written 2.2 years ago by guillaume.gautreau44140

Latest awards to guillaume.gautreau44

No awards yet. Soon to come :-)

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 913 users visited in the last hour