Moderator: genomax

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genomax69k
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Posts by genomax

<prev • 12,409 results • page 2 of 1241 • next >
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Comment: C: Get Gene symbols
... Please use the formatting bar (especially the `code` option) to present your post better. I've done it for you this time. Thank you! ...
written 20 hours ago by genomax69k
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Comment: C: BWA mem failing to locate index files
... After the index creation did you move any of the files around? Does the following work? bwa mem -M -p -t 12 /full_path_to_folder_with_index_files/Homo_sapiens_assembly38 f797.fastq > f797.sam ...
written 20 hours ago by genomax69k
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Comment: C: BWA mem failing to locate index files
... You made the `.dict` and `.fai` files for GATK/some other software? Those should not be needed for `bwa`. ...
written 21 hours ago by genomax69k
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Comment: C: I want to know if there is reference for brain cell types
... [DropViz][1] looks interesting. [Allen brain atlas][2]. [1]: http://dropviz.org/ [2]: https://celltypes.brain-map.org/rnaseq/search ...
written 21 hours ago by genomax69k
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Comment: C: BWA mem failing to locate index files
... > I renamed each file to have the prefix > "Homo_sapiens_assembly38.fasta." Why? You had provided a prefix name `Homo_sapiens_assembly38` for your index. Just use that prefix name in your alignment. Do not change file names after running the indexing. ...
written 21 hours ago by genomax69k
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Comment: C: Perl Programming - How to join two columns of a text file, in which values of th
... $genelength{ $data[9] } += $data[6] - $data[5]; Is creating a `key` --> `value` pair. ...
written 21 hours ago by genomax69k
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Comment: C: Problem with downloading GSE file by GEOquery
... If an answer was helpful, you should upvote it; if the answer resolved your question, you should mark it as accepted. You can accept more than one if they work. ![Upvote|Bookmark|Accept][1] [1]: http://i68.tinypic.com/2m2ykjr.png ...
written 21 hours ago by genomax69k
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Comment: C: Perl Programming - How to join two columns of a text file, in which values of th
... If I understand your question right, why are you not processing the file line by line so you can keep track of gene name and associate it with the gene length for each line? ...
written 21 hours ago by genomax69k
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Comment: C: Cannot create the sorted sam using samtools sort
... If an answer was helpful, you should upvote it; if the answer resolved your question, you should mark it as accepted. You can accept more than one if they work. ![Upvote|Bookmark|Accept][1] [1]: http://i68.tinypic.com/2m2ykjr.png ...
written 22 hours ago by genomax69k
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Comment: C: Host Decontamination: bbTools or Samtools?
... Yes you can do that. ...
written 22 hours ago by genomax69k

Latest awards to genomax

Teacher 22 hours ago, created an answer with at least 3 up-votes. For C: pulling out a single pseudochromosome from my vcf file
Commentator 1 day ago, created a comment with at least 3 up-votes. For C: Google genomics cloud platform ?
Scholar 6 days ago, created an answer that has been accepted. For A: Ensembl gene annotation GRCh37.87
Teacher 6 days ago, created an answer with at least 3 up-votes. For C: pulling out a single pseudochromosome from my vcf file
Scholar 6 days ago, created an answer that has been accepted. For A: Ensembl gene annotation GRCh37.87
Scholar 7 days ago, created an answer that has been accepted. For A: Ensembl gene annotation GRCh37.87
Appreciated 7 days ago, created a post with more than 5 votes. For Inviting NEW Biostars moderators to join Biostars slack channel
Teacher 8 days ago, created an answer with at least 3 up-votes. For C: pulling out a single pseudochromosome from my vcf file
Scholar 8 days ago, created an answer that has been accepted. For A: Ensembl gene annotation GRCh37.87
Teacher 14 days ago, created an answer with at least 3 up-votes. For C: pulling out a single pseudochromosome from my vcf file
Teacher 15 days ago, created an answer with at least 3 up-votes. For C: pulling out a single pseudochromosome from my vcf file
Scholar 16 days ago, created an answer that has been accepted. For A: Ensembl gene annotation GRCh37.87
Commentator 18 days ago, created a comment with at least 3 up-votes. For C: Tutorial RNASEQ problem again!
Scholar 18 days ago, created an answer that has been accepted. For A: Ensembl gene annotation GRCh37.87
Scholar 20 days ago, created an answer that has been accepted. For A: Ensembl gene annotation GRCh37.87
Scholar 22 days ago, created an answer that has been accepted. For A: Ensembl gene annotation GRCh37.87
Good Answer 22 days ago, created an answer that was upvoted at least 5 times. For A: Concatenating fastq.gz files across lanes
Appreciated 22 days ago, created a post with more than 5 votes. For Inviting NEW Biostars moderators to join Biostars slack channel
Teacher 22 days ago, created an answer with at least 3 up-votes. For C: pulling out a single pseudochromosome from my vcf file
Teacher 23 days ago, created an answer with at least 3 up-votes. For C: pulling out a single pseudochromosome from my vcf file
Teacher 23 days ago, created an answer with at least 3 up-votes. For C: pulling out a single pseudochromosome from my vcf file
Scholar 23 days ago, created an answer that has been accepted. For A: Ensembl gene annotation GRCh37.87
Teacher 24 days ago, created an answer with at least 3 up-votes. For C: pulling out a single pseudochromosome from my vcf file
Appreciated 24 days ago, created a post with more than 5 votes. For Inviting NEW Biostars moderators to join Biostars slack channel
Good Answer 29 days ago, created an answer that was upvoted at least 5 times. For A: Concatenating fastq.gz files across lanes

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