User: Eli Korvigo

gravatar for Eli Korvigo
Eli Korvigo180
Reputation:
180
Status:
Trusted
Location:
Russian Federation
Last seen:
2 months, 3 weeks ago
Joined:
5 years, 3 months ago
Email:
g********@me.com

Posts by Eli Korvigo

<prev • 23 results • page 1 of 3 • next >
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Comment: C: Fetching Genbank Entries For List Of Accession Numbers.
... Hello, sorry for a late reply. Your Python seems to be too old. You should update to Python >= 3.3.2 ...
written 4 months ago by Eli Korvigo180
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Custom database in snpEff (Bos taurus ARS-UCD1.2)
... Seeing as snpEff does not show any preconfigured databases for the latest *Bos taurus* assembly (i.e. ARS-UCD1.2), I've been trying to build one myself following the human database example from the [manual][1]: # Go to SnpEff's install dir cd ~/snpeff # Create database dir mkdi ...
annotation snpeff snp written 14 months ago by Eli Korvigo180
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Comment: C: Amd Or Intel Based Workstation For Bioinformatics?
... The main difference is ECC memory. It might not be very important for regular consumers, but it is important for anyone with long-running computations in mind. ...
written 14 months ago by Eli Korvigo180
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Comment: C: Amd Or Intel Based Workstation For Bioinformatics?
... It largely depends on the things you do. If your software is heavy on MKL/BLAS/LAPACK, then AMD is a waste of money. ...
written 21 months ago by Eli Korvigo180
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Answer: A: Workstation : More RAM or Faster RAM
... If you are going to be serious about assembly and RNA-seq, you must get 256GB at the very least. And those RAM clock rates are not important, that is standard 2400 MHz DDR4 modules will do just fine (AMD Zen and Zen+ CPUs are far more sensitive to RAM clocks than Intel CPUs because of the way their ...
written 23 months ago by Eli Korvigo180
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Comment: C: Amino Acid Change To Genomic Location
... I just want to point out that the project has moved to [GitHub][1] [1]: https://github.com/zwdzwd/transvar ...
written 2.2 years ago by Eli Korvigo180
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Comment: C: Modifying fasta file based on vcf information
... Since the documentation is very scarce, it's hard to infer that `FastaVariant` ignores indels. You can see that in the [code](https://github.com/mdshw5/pyfaidx/blob/a088141d8c18d0420eb74a1ce1578c3c1ea7ef8f/pyfaidx/__init__.py#L1111). ...
written 2.4 years ago by Eli Korvigo180
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Comment: C: Modifying fasta file based on vcf information
... This might be an old question, but these days you can basically install any version of Java in a conda environment. Since your conda installation can be local, it will not require superuser rights. ...
written 2.4 years ago by Eli Korvigo180
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Comment: C: Phylogenetic Analysis Of Whole Genomes
... MrBayes is not an ML method. It's based on Bayesian inference. ...
written 2.6 years ago by Eli Korvigo180
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Comment: C: Phylogenetic Analysis Of Whole Genomes
... I wold recommend ssu-align for 16S multiple sequence alignment. It uses a 16S HMM. ...
written 2.6 years ago by Eli Korvigo180

Latest awards to Eli Korvigo

Popular Question 13 months ago, created a question with more than 1,000 views. For GenBank conflicting annotations (identical proteins with different exons)
Popular Question 18 months ago, created a question with more than 1,000 views. For Query UniProt for deleterious and neutral variations
Teacher 2.1 years ago, created an answer with at least 3 up-votes. For A: Fetching Genbank Entries For List Of Accession Numbers.
Commentator 2.8 years ago, created a comment with at least 3 up-votes. For C: Converting Genome Coordinates From One Genome Version To Another (Ucsc Liftover,
Appreciated 3.1 years ago, created a post with more than 5 votes. For A: Fetching Genbank Entries For List Of Accession Numbers.
Good Answer 3.1 years ago, created an answer that was upvoted at least 5 times. For A: Fetching Genbank Entries For List Of Accession Numbers.
Supporter 4.1 years ago, voted at least 25 times.
Teacher 4.1 years ago, created an answer with at least 3 up-votes. For A: Fetching Genbank Entries For List Of Accession Numbers.

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