User: Eli Korvigo

gravatar for Eli Korvigo
Eli Korvigo130
Reputation:
130
Status:
Trusted
Location:
Russian Federation
Last seen:
1 week, 1 day ago
Joined:
3 years, 4 months ago
Email:
g********@me.com

Posts by Eli Korvigo

<prev • 19 results • page 1 of 2 • next >
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Answer: A: Workstation : More RAM or Faster RAM
... If you are going to be serious about assembly and RNA-seq, you must get 256GB at the very least. And those RAM clock rates are not important, that is standard 2400 MHz DDR4 modules will do just fine: you will be far more limited by single-core CPU performance, CPU-caches and IO. 2TB of long-term dis ...
written 10 days ago by Eli Korvigo130
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Comment: C: Amino Acid Change To Genomic Location
... I just want to point out that the project has moved to [GitHub][1] [1]: https://github.com/zwdzwd/transvar ...
written 3 months ago by Eli Korvigo130
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Comment: C: Modifying fasta file based on vcf information
... Since the documentation is very scarce, it's hard to infer that `FastaVariant` ignores indels. You can see that in the [code](https://github.com/mdshw5/pyfaidx/blob/a088141d8c18d0420eb74a1ce1578c3c1ea7ef8f/pyfaidx/__init__.py#L1111). ...
written 6 months ago by Eli Korvigo130
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Comment: C: Modifying fasta file based on vcf information
... This might be an old question, but these days you can basically install any version of Java in a conda environment. Since your conda installation can be local, it will not require superuser rights. ...
written 6 months ago by Eli Korvigo130
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Comment: C: Phylogenetic Analysis Of Whole Genomes
... MrBayes is not an ML method. It's based on Bayesian inference. ...
written 8 months ago by Eli Korvigo130
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Comment: C: Phylogenetic Analysis Of Whole Genomes
... I wold recommend ssu-align for 16S multiple sequence alignment. It uses a 16S HMM. ...
written 8 months ago by Eli Korvigo130
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Answer: A: Phylogenetic Analysis Of Whole Genomes
... Genome-scale multiple sequence alignments are not quite good for phylogenies: they take a lot of time to compute and are never accurate. Moreover, it's hard to imagine a general-purpose sequence evolution model that would be equally adequate for protein-coding, rRNA, tRNA genes, repeats and other re ...
written 8 months ago by Eli Korvigo130
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Comment: C: Reference OTU-picking using pair-end reads without merging
... I literally lose > 99.9% of pairs even after a full-day worth of tuning trimming and joining parameters. ...
written 8 months ago by Eli Korvigo130
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Comment: C: Recommendations For Python Vcf Parser/Writer?
... CyVCF2 https://github.com/brentp/cyvcf2 ...
written 9 months ago by Eli Korvigo130
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Comment: C: Fetching Genbank Entries For List Of Accession Numbers.
... Yes, you need to change the `rettype` argument from `gb` to `fasta` ...
written 17 months ago by Eli Korvigo130

Latest awards to Eli Korvigo

Teacher 7 weeks ago, created an answer with at least 3 up-votes. For A: Fetching Genbank Entries For List Of Accession Numbers.
Commentator 11 months ago, created a comment with at least 3 up-votes. For C: Converting Genome Coordinates From One Genome Version To Another (Ucsc Liftover,
Appreciated 14 months ago, created a post with more than 5 votes. For A: Fetching Genbank Entries For List Of Accession Numbers.
Good Answer 14 months ago, created an answer that was upvoted at least 5 times. For A: Fetching Genbank Entries For List Of Accession Numbers.
Supporter 2.1 years ago, voted at least 25 times.
Teacher 2.1 years ago, created an answer with at least 3 up-votes. For A: Fetching Genbank Entries For List Of Accession Numbers.

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