User: joltex

joltex • 0

Reputation:: 0
Status:: New User
Last seen:: 4 years, 6 months ago
Joined:: 5 years, 7 months ago
Email:: a************@gmail.com

Profile information, website and location are not shown for new users.

This helps us discourage the inappropriate use of our site.

Posts by joltex

vote

answers

1.1k

views

answers

Answer: A: Find number of reads that contain at least 1 sequence from a list of sequences

... In case anyone else is interested in doing something similar, I ended up using a program called '[cutadapt][1]' which is meant as a trimmer but allows you to input a fasta file of sequences to search for in your reads and to specify a max percent errors. It outputs some really nice stats including w ...

written 4.6 years ago by joltex • 0

votes

answers

1.1k

views

answers

Find number of reads that contain at least 1 sequence from a list of sequences

... I have MiSeq fastq's and I would like to know how many reads in each fastq contain at least one sequence from a list of ~15 short (15bp) sequences. Or, conversely, how many reads don't contain any of the sequences in the list. I want to allow for a couple of mismatches and potentially an indel. I'v ...

ngs alignment sequencing written 4.6 years ago by joltex • 0

Latest awards to joltex

Scholar 4.6 years ago, created an answer that has been accepted. For A: Find number of reads that contain at least 1 sequence from a list of sequences