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Posts by joltex
... In case anyone else is interested in doing something similar, I ended up using a program called '[cutadapt]' which is meant as a trimmer but allows you to input a fasta file of sequences to search for in your reads and to specify a max percent errors. It outputs some really nice stats including w ...
... I have MiSeq fastq's and I would like to know how many reads in each fastq contain at least one sequence from a list of ~15 short (15bp) sequences. Or, conversely, how many reads don't contain any of the sequences in the list. I want to allow for a couple of mismatches and potentially an indel. I'v ...
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