User: arpa530

gravatar for arpa530
arpa53010
Reputation:
10
Status:
New User
Location:
India
Last seen:
1 year, 5 months ago
Joined:
3 years, 11 months ago
Email:
a******@gmail.com

Posts by arpa530

<prev • 14 results • page 1 of 2 • next >
0
votes
2
answers
888
views
2
answers
Answer: A: Gene Ontology Analysis
... Hi, Thanks for your response. Unfortunately, it didn't say clearly about the GOstats package. I only need to know which "GO-terms" are enriched or depleted. But I couldn't find no such thing in the "GOstats" vignette. ...
written 22 months ago by arpa53010
0
votes
2
answers
888
views
2
answers
Gene Ontology Analysis
... Hello, I am doing RNA-Seq analysis and found more than 500 significantly differentially expressed genes. Next, I have finished the gene ontology analysis by using the GOStats package in R. But in the output file, I couldn't see whether any "GO-terms" enriched or depleted. I have tried to find in th ...
rna-seq written 22 months ago by arpa53010
1
vote
2
answers
1.5k
views
2
answers
Pathway analysis of Mouse
... Hello, I am working on RNA-seq analysis of mouse. I have found significantly differentiated gene through cuff diff analysis. After doing that I have performed the Gene Ontology and Pathview analysis. Here is my next question how can I identify which genes are linked to multiple pathways? Because Pa ...
rna-seq written 2.7 years ago by arpa53010 • updated 2.7 years ago by EagleEye6.3k
0
votes
2
answers
964
views
2
answers
Answer: A: Histone modification of Mouse genome
... Thanks. I will look into this. ...
written 2.9 years ago by arpa53010
0
votes
2
answers
964
views
2
answers
Histone modification of Mouse genome
... Hello All, I am presently working with histone modification of mouse genome. I am quite familiar with the histone modification data available in the UCSC genome browser. But as far as I know, the data is only available for human only. So, can you please help me to find out is there any histone modi ...
chip-seq written 2.9 years ago by arpa53010
0
votes
3
answers
1.2k
views
3
answers
Answer: A: CNV data for Urothelial Bladder carcinoma
... Dear Davis, Thanks for your kind response. I will surely do that. ...
written 3.6 years ago by arpa53010
0
votes
3
answers
1.2k
views
3
answers
Answer: A: CNV data for Urothelial Bladder carcinoma
... Dear Davis, Thanks for your response. I have gone though your answer and now I am quite relaxed to get this answer. As it is a log2 ratio that means should I perform normalization the data? Please let me know. I have basically taken the four CNV data set from UCSC cancer genome browser to perform m ...
written 3.6 years ago by arpa53010
0
votes
3
answers
1.2k
views
3
answers
CNV data for Urothelial Bladder carcinoma
... Dear all, Presently I am working on the CNV data analysis of urothelial bladder carcinoma. I have basically downloaded the data from UCSC cancer genome browser. There are five data sets available for CNV study.The genomic matrix is a tab separated file containing the genomic values for each sample ...
cnv written 3.7 years ago by arpa53010
6
votes
1
answer
1.4k
views
1
answer
Regarding UCSC genome browser picture
... Could you please help me how can I remove the blue grid line from the picture of UCSC genome browser. Because to remove the grid line manually is so time taking process. ...
ucsc genome browser written 3.7 years ago by arpa53010 • updated 3.7 years ago by Joseph Pearson430
0
votes
2
answers
1.6k
views
2
answers
Answer: A: CNV data for Urothelial Bladder carcinoma
... Thanks for your response. I have checked the site and what they have showed I have pasted below now I didn't get which I have to download for the work.     Clinical Analyses    CopyNumber Analyses Aggregate AnalysisFeatures CopyNumber Clustering CNMF CopyNumber Clustering CNMF thresholded Copy ...
written 3.7 years ago by arpa53010

Latest awards to arpa530

Popular Question 22 months ago, created a question with more than 1,000 views. For CNV data for Urothelial Bladder carcinoma

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1155 users visited in the last hour