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Comment: Comment: ABSOLUTE to estimate tumour purity from WES data
updated 15 months ago by 43k • written 8.2 years ago by ▴ 170
1
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1
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18k
views
Answer: A: Software For Hla Typing Using Ngs?
updated 4.4 years ago by 43k • written 8.4 years ago by ▴ 170
9
votes
24
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9.1k
views
10 follow
Download SAM/BAM files from SRA takes ages!!!
SRA bam
updated 5.5 years ago by ▴ 40 • written 6.7 years ago by ▴ 170
0
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0
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2.1k
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vcf2maf not generating `t_depth t_ref_count t_alt_count` columns in MAF file
vcf maf t_depth t_ref_count talt_count
5.5 years ago by Alejandro Jimenez Sanchez ▴ 170
10
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4
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6.7k
views
R phangorn phylogenetic analysis from somatic mutations' binary table
phangorn R tumour phylogeny binary table
updated 9 months ago by • 0 • written 8.2 years ago by ▴ 170
0
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10
replies
4.6k
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ABSOLUTE MAF error
MAF ABSOLUTE
updated 5.7 years ago by ▴ 10 • written 6.7 years ago by ▴ 170
0
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0
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5.6k
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Comment: C: how to correct gene expression based on tumor purity
6.3 years ago by Alejandro Jimenez Sanchez ▴ 170
0
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1
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2.4k
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Comment: C: Processing Whole Genome Sequencing data (shallow) and call Copy Number Variation
6.4 years ago by Alejandro Jimenez Sanchez ▴ 170
0
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3
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2.4k
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Processing Whole Genome Sequencing data (shallow) and call Copy Number Variations
Whole genome sequecnig copy number variation
6.4 years ago by Alejandro Jimenez Sanchez ▴ 170
0
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1
reply
2.1k
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Hyperbolic significance threshold for volcano plot
volcanoplot
6.6 years ago by Alejandro Jimenez Sanchez ▴ 170
0
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1
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4.6k
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Comment: C: ABSOLUTE MAF error
6.6 years ago by Alejandro Jimenez Sanchez ▴ 170
0
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2
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4.6k
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Comment: C: ABSOLUTE MAF error
6.7 years ago by Alejandro Jimenez Sanchez ▴ 170
0
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1
reply
4.6k
views
Comment: C: ABSOLUTE MAF error
6.7 years ago by Alejandro Jimenez Sanchez ▴ 170
8
votes
2
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4.2k
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Install ABSOLUTE Error
ABSOLUTE R Package
updated 6.9 years ago by ▴ 70 • written 7.1 years ago by ▴ 170
0
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0
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1.2k
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Comment: C: Mapping TCGA IDs
6.9 years ago by Alejandro Jimenez Sanchez ▴ 170
0
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2
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1.2k
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Mapping TCGA IDs
TCGA
updated 6.9 years ago by 141k • written 6.9 years ago by ▴ 170
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0
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3.9k
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Comment: C: Protein database for TCGA MAF files
7.0 years ago by Alejandro Jimenez Sanchez ▴ 170
0
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0
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3.9k
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Comment: C: Protein database for TCGA MAF files
7.0 years ago by Alejandro Jimenez Sanchez ▴ 170
0
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0
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3.9k
views
Comment: C: Protein database for TCGA MAF files
7.0 years ago by Alejandro Jimenez Sanchez ▴ 170
6
votes
0
replies
4.2k
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Answer: A: Install ABSOLUTE Error
7.1 years ago by Alejandro Jimenez Sanchez ▴ 170
2
votes
6
replies
4.2k
views
Data repository for Whole Exome Sequencing
WES Database GEO
7.3 years ago by Alejandro Jimenez Sanchez ▴ 170
0
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0
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13k
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Answer: A: Where Can I Download All Exons Of The Human Genome In Fasta Format (One Big File
7.7 years ago by Alejandro Jimenez Sanchez ▴ 170
0
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0
replies
25k
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Answer: A: Hypergeometric Test On Gene Set
8.0 years ago by Alejandro Jimenez Sanchez ▴ 170
0
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0
replies
1.5k
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Is it possible to include all possible gene transcripts affected by a mutations using vcf2maf?
vcf2maf
8.0 years ago by Alejandro Jimenez Sanchez ▴ 170
0
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1
reply
20k
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Comment: C: How to run multiple jobs with GNU parallel with multiple arguments?
8.1 years ago by Alejandro Jimenez Sanchez ▴ 170
0
votes
1
reply
20k
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Comment: C: How to run multiple jobs with GNU parallel with multiple arguments?
8.1 years ago by Alejandro Jimenez Sanchez ▴ 170
0
votes
1
reply
20k
views
Comment: C: How to run multiple jobs with GNU parallel with multiple arguments?
8.1 years ago by Alejandro Jimenez Sanchez ▴ 170
3
votes
8
replies
20k
views
How to run multiple jobs with GNU parallel with multiple arguments?
GNU parallel
updated 8.1 years ago by ▴ 60 • written 8.1 years ago by ▴ 170
1
vote
1
reply
143k
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Comment: A: Gnu Parallel - Parallelize Serial Command Line Programs Without Changing Them
8.1 years ago by Alejandro Jimenez Sanchez ▴ 170
0
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1
reply
9.9k
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Comment: C: ABSOLUTE to estimate tumour purity from WES data
8.2 years ago by Alejandro Jimenez Sanchez ▴ 170
6
votes
6
replies
9.9k
views
ABSOLUTE to estimate tumour purity from WES data
ABSOLUTE Whole Exome Sequencing Tumour Purity
updated 15 months ago by 43k • written 8.2 years ago by ▴ 170
0
votes
1
reply
4.9k
views
Comment: C: How to create B-allele frequency file for ADTEx?
8.2 years ago by Alejandro Jimenez Sanchez ▴ 170
1
vote
2
replies
5.1k
views
PyClone without copy number data
PyClone next-gen tumor_phylogeny
updated 8.4 years ago by ▴ 10 • written 8.4 years ago by ▴ 170
1
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0
replies
2.8k
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Comment: C: TCGA Mutation Annotation Files (MAFs) with ref_context column
8.7 years ago by Alejandro Jimenez Sanchez ▴ 170
3
votes
2
replies
2.8k
views
TCGA Mutation Annotation Files (MAFs) with ref_context column
MAF TCGA
updated 17 months ago by 43k • written 8.7 years ago by ▴ 170
6
votes
11
replies
3.9k
views
Protein database for TCGA MAF files
MAF TCGA
updated 16 months ago by 43k • written 8.8 years ago by ▴ 170
0
votes
0
replies
3.9k
views
Comment: Comment: Protein database for TCGA MAF files
updated 16 months ago by 43k • written 8.8 years ago by ▴ 170
0
votes
1
reply
3.9k
views
Comment: C: Protein database for TCGA MAF files
8.8 years ago by Alejandro Jimenez Sanchez ▴ 170
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