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questions
1
vote
5
replies
3.5k
views
How to run Interproscan with old GLIBC 2.12 on centos cluster?
interproscan
cluster
updated 5.2 years ago by
chipeyown
• 0 • written 8.0 years ago by
tcf.hcdg
▴ 70
2
votes
6
replies
5.5k
views
How to update nr database for commandline BLAST?
update
BLAST
database
6.6 years ago by
tcf.hcdg
▴ 70
2
votes
6
replies
6.6k
views
Merging two fastq.gz files
fastq
merging
updated 6.8 years ago by
igor
13k • written 6.8 years ago by
tcf.hcdg
▴ 70
6
votes
7
replies
2.6k
views
How to read a loop over to read a file in a folder for many folders
trimmomatic
filtering multiple files
updated 7.0 years ago by
shenwei356
8.7k • written 7.0 years ago by
tcf.hcdg
▴ 70
0
votes
12
replies
4.2k
views
How to merge BLAST XML output from different database?
BLASTXML
merge blast
updated 7.9 years ago by
Pierre Lindenbaum
165k • written 7.9 years ago by
tcf.hcdg
▴ 70
1
vote
2
replies
3.1k
views
How to "filter_low_expr_transcripts"?
filter
TRANSCRIPTS
LOW EXPRESSION
RNA-Seq
8.2 years ago by
tcf.hcdg
▴ 70
0
votes
0
replies
2.7k
views
RSEM error for for Transcript quantification
RSEM
trinity
Assembly
transcript quantification
8.2 years ago by
tcf.hcdg
▴ 70
3
votes
9
replies
3.9k
views
How can I remove adapter sequence from illumina 2000 paired end data?
adapters
cutadapt
trimgalore
fastqc
illumina PE
updated 8.4 years ago by
Brian Bushnell
20k • written 8.4 years ago by
tcf.hcdg
▴ 70
5
votes
5
replies
8.2k
views
How can I get FastQC html report?
fastqc
NGS
fastqc error
fastqc report
updated 8.4 years ago by
EagleEye
7.6k • written 8.4 years ago by
tcf.hcdg
▴ 70
4
votes
5
replies
19k
views
Split multifasta file in individual sequence file
multifasta
updated 2.2 years ago by
Kyubong
▴ 20 • written 8.7 years ago by
tcf.hcdg
▴ 70
0
votes
10
replies
4.2k
views
How to extract sequence from fasta file with specific coordinates?
fasta
blast
sequence
updated 8.7 years ago by
shaun
▴ 80 • written 8.7 years ago by
tcf.hcdg
▴ 70
2
votes
11
replies
6.4k
views
How to do multiple blast for multifasta file/s with command line blast
blast
updated 8.8 years ago by
Pierre Lindenbaum
165k • written 8.8 years ago by
tcf.hcdg
▴ 70
4
votes
3
replies
3.3k
views
How to remove duplicated sequences from multi fasta file?
duplicate sequence removal
multifasta
updated 8.8 years ago by
Antonio R. Franco
★ 5.2k • written 8.8 years ago by
tcf.hcdg
▴ 70
3
votes
4
replies
3.9k
views
Translate DNA sequence in to 6 reading frames (forward& reverse)
perl
DNA translation
updated 8.9 years ago by
SES
8.6k • written 8.9 years ago by
tcf.hcdg
▴ 70
1
vote
6
replies
2.9k
views
Is it possible that sequence have blast hit in arabidopsis database and no blast hit for viridiplantae and swissprot database?
blast
updated 2.5 years ago by
Ram
44k • written 9.3 years ago by
tcf.hcdg
▴ 70
0
votes
1
reply
2.3k
views
How can I get the fasta sequences of BLASTP results
fasta
blast
updated 2.4 years ago by
Ram
44k • written 9.5 years ago by
tcf.hcdg
▴ 70
0
votes
3
replies
2.0k
views
How can I make the loop to count the gene against query id
loop
updated 2.4 years ago by
Ram
44k • written 9.5 years ago by
tcf.hcdg
▴ 70
2
votes
6
replies
3.1k
views
How can I make the bar graph of genes from BLAST result?
blast
updated 2.4 years ago by
Ram
44k • written 9.5 years ago by
tcf.hcdg
▴ 70
3
votes
6
replies
8.0k
views
unique sequence IDs from fasta file
fasta
grep
updated 2.3 years ago by
Ram
44k • written 9.6 years ago by
tcf.hcdg
▴ 70
3
votes
7
replies
3.1k
views
sequence extraction from multifast file using IDs in another text file
fasta
grep
updated 2.3 years ago by
Ram
44k • written 9.6 years ago by
tcf.hcdg
▴ 70
12
votes
6
replies
2.3k
views
how can I retrieve FASTA sequence using ID in another text file?
fasta
updated 2.2 years ago by
Ram
44k • written 9.6 years ago by
tcf.hcdg
▴ 70
1
vote
3
replies
3.2k
views
fasta file loading error
read.fasta
updated 2.2 years ago by
Ram
44k • written 9.6 years ago by
tcf.hcdg
▴ 70
0
votes
2
replies
2.5k
views
BLAST, OID not found
blast
updated 2.2 years ago by
Ram
44k • written 9.7 years ago by
tcf.hcdg
▴ 70
0
votes
12
replies
4.0k
views
standalone blast , database error
blast
updated 2.2 years ago by
Ram
44k • written 9.7 years ago by
tcf.hcdg
▴ 70
13
votes
11
replies
9.1k
views
7 follow
How can I BLAST 4,54,871 sequences?
BLAST
updated 2.2 years ago by
Ram
44k • written 9.7 years ago by
tcf.hcdg
▴ 70
0
votes
3
replies
2.6k
views
How can I do blast of cDNA library in single command, and stored the top 10 result in single file
blast
sequencing
updated 2.2 years ago by
Ram
44k • written 9.7 years ago by
tcf.hcdg
▴ 70
26 results • Page
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