User: tcf.hcdg

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tcf.hcdg60
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European Union
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3 weeks, 6 days ago
Joined:
4 years, 9 months ago
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Posts by tcf.hcdg

<prev • 89 results • page 2 of 9 • next >
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Comment: C: How to merge BLAST XML output from different database?
... I am sorry I couldn't respond earlier because of my limited posting option. Well, Itried and the output is like that: tb44227@lido-gw02:~/nobackup/jvarkit>xmllint ~/nobackup/Radula/Trinity_1500k_Radula_lnr_hededt_split/merging_xml_db1_db2/03_Rma_trn1500k_nrbx5_hsp20_e3_dbp1 > /dev ...
written 3.0 years ago by tcf.hcdg60
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Comment: C: How to merge BLAST XML output from different database?
... java -jar dist/mergeblastxml.jar ~/nobackup/Radula/Trinity_1500k_Radula_lnr_hededt_split/merging_xml_db1_db2/03_Rma_trn1500k_nrbx5_hsp20_e3_dbp1 ~/nobackup/Radula/Trinity_1500k_Radula_lnr_hededt_split/merging_xml_db1_db2/03_Rma_trn1500k_nrbx5_hsp20_e3_dbp2 > output.xml [INFO][MergeBlastX ...
written 3.0 years ago by tcf.hcdg60
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Comment: C: How to merge BLAST XML output from different database?
... No, ecah file has 50000 query sequences, am I have 62 files 31 for each. ...
written 3.0 years ago by tcf.hcdg60
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Comment: C: How to merge BLAST XML output from different database?
... For example "TRINITY_DN99193_c0_g5" query against database1 blastx BLASTX 2.6.0+ Stephen F. Altschul, Thomas L. Madden, Alejandro A. Sch&auml;ffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation ...
written 3.0 years ago by tcf.hcdg60
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Comment: C: How to merge BLAST XML output from different database?
... Yes I use the same query sequence for both part of database. ...
written 3.0 years ago by tcf.hcdg60
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How to merge BLAST XML output from different database?
... Hello I did the command line BLAST against NCBI nr database. Because of the limited computational resourses, administrator at our university reccomended me to split the query sequence as well as databases (120gb of nr). I splited the database in almost two equall parts and then did the blastx agai ...
blastxml merge blast written 3.0 years ago by tcf.hcdg60 • updated 3.0 years ago by Pierre Lindenbaum127k
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How to run Interproscan with old GLIBC 2.12 on centos cluster?
... Hello I would like to run interproscan on cluster through PBS /torque. I tried wtih the test script and could not succeed because of the GLIBC_2.14. The reason is the entire software stack of CentOS 6.8 which our cluster is running was built on top of glibc 2.12 which at the moment can't be upg ...
cluster interproscan written 3.1 years ago by tcf.hcdg60 • updated 4 months ago by chipeyown0
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Comment: C: How To Split One Big Sequence File Into Multiple Files With Less Than 1000 Seque
... got it. my mistake. Now worked ...
written 3.2 years ago by tcf.hcdg60
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Comment: C: How To Split One Big Sequence File Into Multiple Files With Less Than 1000 Seque
... I tried this for my sequence file , but not working awk: cmd. line:1: (FILENAME=- FNR=1) fatal: expression for `>>' redirection has null string value ...
written 3.2 years ago by tcf.hcdg60
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Comment: C: How to "filter_low_expr_transcripts"?
... Thanks. I changed it and It works ...
written 3.4 years ago by tcf.hcdg60

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Popular Question 11 weeks ago, created a question with more than 1,000 views. For How to remove duplicated sequences from multi fasta file?
Great Question 4 months ago, created a question with more than 5,000 views. For Split multifasta file in individual sequence file
Popular Question 4 months ago, created a question with more than 1,000 views. For How to do multiple blast for multifasta file/s with command line blast
Popular Question 13 months ago, created a question with more than 1,000 views. For How to do multiple blast for multifasta file/s with command line blast
Popular Question 13 months ago, created a question with more than 1,000 views. For How to remove duplicated sequences from multi fasta file?
Popular Question 13 months ago, created a question with more than 1,000 views. For Translate DNA sequence in to 6 reading frames (forward& reverse)
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Popular Question 20 months ago, created a question with more than 1,000 views. For How to do multiple blast for multifasta file/s with command line blast
Popular Question 20 months ago, created a question with more than 1,000 views. For How to remove duplicated sequences from multi fasta file?
Popular Question 20 months ago, created a question with more than 1,000 views. For Translate DNA sequence in to 6 reading frames (forward& reverse)
Popular Question 21 months ago, created a question with more than 1,000 views. For How to do multiple blast for multifasta file/s with command line blast
Popular Question 21 months ago, created a question with more than 1,000 views. For How to remove duplicated sequences from multi fasta file?
Popular Question 21 months ago, created a question with more than 1,000 views. For Translate DNA sequence in to 6 reading frames (forward& reverse)
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Popular Question 21 months ago, created a question with more than 1,000 views. For How to do multiple blast for multifasta file/s with command line blast
Popular Question 21 months ago, created a question with more than 1,000 views. For How to remove duplicated sequences from multi fasta file?
Popular Question 22 months ago, created a question with more than 1,000 views. For How to do multiple blast for multifasta file/s with command line blast
Popular Question 23 months ago, created a question with more than 1,000 views. For How to do multiple blast for multifasta file/s with command line blast
Popular Question 23 months ago, created a question with more than 1,000 views. For Translate DNA sequence in to 6 reading frames (forward& reverse)
Popular Question 23 months ago, created a question with more than 1,000 views. For How to do multiple blast for multifasta file/s with command line blast
Popular Question 23 months ago, created a question with more than 1,000 views. For How to do multiple blast for multifasta file/s with command line blast
Popular Question 2.1 years ago, created a question with more than 1,000 views. For How to do multiple blast for multifasta file/s with command line blast
Popular Question 2.1 years ago, created a question with more than 1,000 views. For id in text file for sequence retrival from multifasta

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