User: jennavive00

gravatar for jennavive00
jennavive0020
Reputation:
20
Status:
New User
Location:
United States
Last seen:
4 years, 9 months ago
Joined:
4 years, 11 months ago
Email:
j**********@gmail.com

Posts by jennavive00

<prev • 5 results • page 1 of 1 • next >
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Comment: C: PredictABLE R package - HELP building a weight genetic risk score
... Did you ever get a solution for this? I'm trying to create the vector and I'm also confused what they mean by "named vector containing the same names as mentioned in genetic variants". ...
written 4.8 years ago by jennavive0020
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Comment: C: PLINK gxe not reading covariate file
... I'm a little confused. If it doesn't do case/control studies then what is it used for? It says here https://www.cog-genomics.org/plink2/order that --gxe is used for quantitative phenotype + case/control covariate association test ...
written 5.0 years ago by jennavive0020
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Comment: C: PLINK gxe not reading covariate file
... Thank you! :) ...
written 5.0 years ago by jennavive0020
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Comment: C: PLINK gxe not reading covariate file
... PLINK v1.90b3j 64-bit (2 Apr 2015) 6 arguments: --bfile OMNI --covar omni.txt --gxe Hostname: BR1 Working directory: W:\AIDGWAS Start time: Thu Jun 18 11:18:48 2015 Random number seed: 1434651528 12245 MB RAM detected; reserving 6122 MB for main workspace. 608811 variants loaded from .bim file. 558 ...
written 5.0 years ago by jennavive0020
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PLINK gxe not reading covariate file
... I am trying to conduct a GxE in PLINK using a covariate file but PLINK doesn't seem to be recognizing the file. Can someone tell me what I'm doing wrong? plink --bfile omni --gxe --covar omni.txt The covariate file omni.txt has the same # of observations as the .fam file and contains FID, IID, Cov ...
gxe plink covariate written 5.0 years ago by jennavive0020

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