User: silas008

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silas00870
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Brazil
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Posts by silas008

<prev • 46 results • page 1 of 5 • next >
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Comment: C: How to extract reads from bam file?
... I really didn't know why this was not working. I will try your suggestion. Thanks ...
written 15 days ago by silas00870
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Comment: C: How to extract reads from bam file?
... Now i am using -L option and a bed file and the **output.bam** is ok. There are a lot of reads. Thanks ...
written 15 days ago by silas00870
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Comment: C: How to extract reads from bam file?
... I will do that. Thanks again ...
written 15 days ago by silas00870
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Comment: C: How to extract reads from bam file?
... First of all, thank you for helpping. I am sorry for the formatting, I am not so familiar with Biostars. I didn't know there is a code formatting bar. I will use it in next posts. I am using Samtools version 1.4 and the option -L worked very well for me. I didn't know what I was doing wrong before ...
written 15 days ago by silas00870
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How to extract reads from bam file?
... Hi, guys! I am trying to extract some reads that aligned in specific regions of the mitochondrial genome. I want to know what is the length of these reads, so I need to extract them before to measure, to avoid the measurement of other reads the aligned in other regions. I did it by different ways, ...
alignment rna-seq written 15 days ago by silas00870 • updated 15 days ago by Ram17k
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Comment: C: PCA plot from read count matrix from RNA-Seq
... How can I put the names of the samples in this case? And different colors for it group? Because in the pipeline there are just the basic information to plot a simple graph. Tks ...
written 20 days ago by silas00870
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Comment: C: Can I use absolut numbers (not log values) to make a Heatmap?
... Hi, Kevin. I have another question, I will appreciate if you can help me. In my data, actually, I don't have control group. Image that you want to measure the expression of a set of genes in tree different dog breeds. In many cases you will no have a control group, you are just comparing them. ...
written 22 days ago by silas00870
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Comment: C: Can I use absolut numbers (not log values) to make a Heatmap?
... Thank you very much, Kevin!!! ...
written 28 days ago by silas00870
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Comment: C: Can I use absolut numbers (not log values) to make a Heatmap?
... Thank you very much!!! ...
written 28 days ago by silas00870
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Can I use absolut numbers (not log values) to make a Heatmap?
... Hi, guys I have a RNA-seq data with 3 different groups treated with different diets. I already made the heatmap with the log2 values from the comparison between the groups. Now I want to make another heatmap containig not the comparison between the groups but the normalized expression values (in t ...
gene R rna-seq sequencing written 28 days ago by silas00870 • updated 28 days ago by Kevin Blighe26k

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