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questions
6
votes
7
replies
1.0k
views
Best aligner to identify single point mutation
RNA-Seq
4.2 years ago by
silas008
▴ 170
10
votes
9
replies
4.3k
views
glmQLFTest coef for multiple comparisons
edgeR
RNA-Seq
updated 4.3 years ago by
Gordon Smyth
★ 7.8k • written 4.3 years ago by
silas008
▴ 170
6
votes
7
replies
5.8k
views
EdgeR analysis with CPM normalzed counts
RNA-Seq
updated 4.4 years ago by
ATpoint
86k • written 4.4 years ago by
silas008
▴ 170
2
votes
1
reply
1.3k
views
EdgeR matrix design and comparisons for paired samples
RNA-Seq
edgeR
updated 4.5 years ago by
h.mon
35k • written 4.5 years ago by
silas008
▴ 170
1
vote
2
replies
4.8k
views
STAR error: EXITING because of FATAL ERROR in reads input: short read sequence line: 0
RNA-Seq
updated 4.6 years ago by
ruiyan_hou
• 0 • written 4.9 years ago by
silas008
▴ 170
1
vote
2
replies
991
views
How to caracterize single point mutation (or editing) in RNAseq?
RNAseq
GATK
5.0 years ago by
silas008
▴ 170
3
votes
3
replies
1.5k
views
Is there some good software to align/compare fasta sequences in my PC
fasta
comparison
updated 5.6 years ago by
brian.fristensky
▴ 460 • written 5.6 years ago by
silas008
▴ 170
8
votes
15
replies
12k
views
How to perform multiple comparisons using edgeR?
RNA-Seq
edgeR
updated 2.0 years ago by
ryandward
• 0 • written 5.7 years ago by
silas008
▴ 170
1
vote
0
replies
1.1k
views
What type of GTF file should I use for miRNAseq analysis?
RNA-Seq
miRNA
edgeR
5.7 years ago by
silas008
▴ 170
1
vote
2
replies
2.3k
views
How to add the gene names on wormbase_genes BED file?
genes
wormbase
updated 2.6 years ago by
Ram
44k • written 9.1 years ago by
silas008
▴ 170
2
votes
1
reply
2.3k
views
edgeR analysis outputs FDR equals 1
RNA-Seq
edgeR
FDR
updated 5.8 years ago by
swbarnes2
14k • written 5.8 years ago by
silas008
▴ 170
5
votes
10
replies
3.3k
views
Should I keep all HTSeq table informations for edgeR analysis?
htseq
edgeR
RNAseq
updated 5.8 years ago by
AK
★ 2.2k • written 5.8 years ago by
silas008
▴ 170
4
votes
8
replies
2.7k
views
Bowtie2 mapped just 50% of the reads
RNA-Seq
updated 6.0 years ago by
Biostar
20 • written 6.1 years ago by
silas008
▴ 170
2
votes
8
replies
2.4k
views
Problem with bad quality bases in RNAseq
RNA-seq
updated 2.3 years ago by
Ram
44k • written 9.6 years ago by
silas008
▴ 170
0
votes
2
replies
6.2k
views
GFF3 to GTF
gff
gtf
updated 6.4 years ago by
Ram
44k • written 9.0 years ago by
silas008
▴ 170
17
votes
8
replies
44k
views
7 follow
LogFC and LogCPM
rna-seq
updated 3.6 years ago by
mohammedtoufiq91
▴ 260 • written 7.8 years ago by
silas008
▴ 170
3
votes
8
replies
4.9k
views
How to extract reads from bam file?
RNA-Seq
alignment
updated 6.5 years ago by
Ram
44k • written 6.5 years ago by
silas008
▴ 170
9
votes
6
replies
2.7k
views
Can I use absolut numbers (not log values) to make a Heatmap?
RNA-Seq
R
sequencing
gene
updated 6.6 years ago by
Kevin Blighe
89k • written 6.6 years ago by
silas008
▴ 170
1
vote
2
replies
1.1k
views
C. elegans mitochondrial genome X54252
sequencing
assembly
6.6 years ago by
silas008
▴ 170
3
votes
1
reply
1.8k
views
Problems to index reference genome and to align RNAseq
RNAseq
Index
chromosome
8.5 years ago by
silas008
▴ 170
0
votes
3
replies
3.0k
views
GEO (NCBI) confusing data
fastq
fasta
sra
updated 2.6 years ago by
Ram
44k • written 9.1 years ago by
silas008
▴ 170
10
votes
4
replies
12k
views
Difference between UCSC and Ensembl genomes
Ensembl
build
genome
updated 3.4 years ago by
Ram
44k • written 9.1 years ago by
silas008
▴ 170
0
votes
0
replies
1.8k
views
Pipeline for miRNA expression analysis
RNA-Seq
9.1 years ago by
silas008
▴ 170
4
votes
2
replies
1.9k
views
Length of RNAseq reads
RNA-Seq
miRNA
updated 2.5 years ago by
Ram
44k • written 9.1 years ago by
silas008
▴ 170
0
votes
2
replies
2.1k
views
Mapping reads on small reference genomes
miRNA
alignment
updated 2.4 years ago by
Ram
44k • written 9.4 years ago by
silas008
▴ 170
3
votes
5
replies
2.1k
views
Kmer sequences in 5' RNAseq reads
K-mer
RNA-Seq
updated 2.3 years ago by
Ram
44k • written 9.5 years ago by
silas008
▴ 170
8
votes
6
replies
6.3k
views
Problem with trimming ilumina adapter
RNA-Seq
cutadapt
adapter
updated 3.9 years ago by
Ram
44k • written 9.5 years ago by
silas008
▴ 170
3
votes
3
replies
3.7k
views
Problem with Fastqc quality control for miRNAseq data
RNA-Seq
miRNA
Fastqc
updated 2.3 years ago by
Ram
44k • written 9.6 years ago by
silas008
▴ 170
7
votes
8
replies
3.1k
views
I need to know how to trimming RNAseq of GEO dataset.
RNA-Seq
updated 2.2 years ago by
Ram
44k • written 9.7 years ago by
silas008
▴ 170
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