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Answer: A: Extract samples with alternative genotype from a multi-sample VCF
3.8 years ago by abascalfederico ★ 1.2k
3
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0
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64k
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Answer: A: What Are The Most Common Stupid Mistakes In Bioinformatics?
updated 4.3 years ago by 44k • written 8.9 years ago by ★ 1.2k
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Answer: A: Apt way to perform multi pairwise alignments ?
updated 4.7 years ago by 44k • written 8.6 years ago by ★ 1.2k
3
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Answer: A: 23andMe SNP data does not correlate with UCSC. What am I doing wrong?
updated 4.7 years ago by 44k • written 8.6 years ago by ★ 1.2k
6
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Answer: A: samtools view - F 4 removes sam header and truncates file??
updated 4.7 years ago by 44k • written 8.6 years ago by ★ 1.2k
2
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0
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Answer: A: How to download intronic positions from Ensembl
updated 4.7 years ago by 44k • written 8.6 years ago by ★ 1.2k
3
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1
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4.2k
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Answer: A: Recode VCF file according to ancestral alleles (AA)
updated 4.7 years ago by 44k • written 8.7 years ago by ★ 1.2k
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0
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2.5k
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Answer: A: Repeat regions were contained in cds file (extracted from evm.out.gff3 by using
updated 4.7 years ago by 44k • written 8.7 years ago by ★ 1.2k
3
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1
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Answer: A: How to properly merge multiple runs into one bam file ?
updated 4.7 years ago by 44k • written 8.7 years ago by ★ 1.2k
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0
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3.3k
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Answer: A: How to show my chosen SNPs on the UCSC genome browser?
updated 4.8 years ago by 44k • written 8.8 years ago by ★ 1.2k
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0
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2.2k
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Answer: A: Gene to coordinates
updated 4.8 years ago by 44k • written 8.8 years ago by ★ 1.2k
0
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1
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5.6k
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Answer: A: Bioedit: remove all gaps in selected region
updated 4.8 years ago by 44k • written 8.8 years ago by ★ 1.2k
2
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0
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9.8k
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Answer: A: BWA alignment using paired end reads from different lanes
updated 4.8 years ago by 44k • written 8.8 years ago by ★ 1.2k
0
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0
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3.3k
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Answer: A: finding reads from fastq files corresponds to particular transcript from fasta f
updated 4.8 years ago by 44k • written 8.8 years ago by ★ 1.2k
1
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1
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10k
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Answer: A: What are the terms for reference allele and alternate alleles in cancer?
updated 4.8 years ago by 44k • written 8.8 years ago by ★ 1.2k
0
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1
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1.9k
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Answer: A: Gene names from NCBI is not able to use for overlapping in species comparison
updated 4.8 years ago by 44k • written 8.8 years ago by ★ 1.2k
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0
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4.4k
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Answer: A: How to find transposable element genes in ensembl annotation
updated 4.8 years ago by 44k • written 8.8 years ago by ★ 1.2k
4
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1
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7.5k
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Answer: A: How to interpret LRT < 0 in codeml branch-model based test?
updated 4.8 years ago by 44k • written 8.8 years ago by ★ 1.2k
1
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0
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1.6k
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Answer: A: Retrieve taxon age from Ensembl
updated 4.8 years ago by 44k • written 9.1 years ago by ★ 1.2k
4
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1
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7.8k
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Answer: A: distance between two genes
updated 4.9 years ago by 44k • written 9.2 years ago by ★ 1.2k
2
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1
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2.0k
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Answer: A: Phylogeny using UTR sequences: any insights?
updated 4.9 years ago by 44k • written 9.2 years ago by ★ 1.2k
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1
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1.9k
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Answer: A: Alignment & Conserved Element
updated 6.0 years ago by 44k • written 8.6 years ago by ★ 1.2k
1
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0
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3.1k
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Answer: A: Convert ensembl gene ID
updated 6.0 years ago by 44k • written 8.6 years ago by ★ 1.2k
2
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1
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4.0k
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Answer: C: Help with CD-hit commands for DNA sequences
7.5 years ago by abascalfederico ★ 1.2k
0
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1
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3.4k
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Answer: A: what is parawise dN/dS used for?
7.5 years ago by abascalfederico ★ 1.2k
0
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2
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2.7k
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Answer: A: Phylogenetic Tree to compare my sequences to a database
7.5 years ago by abascalfederico ★ 1.2k
1
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1
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2.2k
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Answer: A: Swiss-Prot human count from the archives
7.6 years ago by abascalfederico ★ 1.2k
2
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2
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1.7k
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Answer: C: Question about 1000 genome project
7.6 years ago by abascalfederico ★ 1.2k
3
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2
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2.1k
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Answer: A: remove gapped bases in MSA
7.6 years ago by abascalfederico ★ 1.2k
0
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0
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2.6k
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Answer: A: ORFs from blastx results
7.8 years ago by abascalfederico ★ 1.2k
0
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1
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2.3k
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Answer: A: Count right and left mate pairs from Sam files
7.9 years ago by abascalfederico ★ 1.2k
2
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1
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2.1k
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Answer: A: Pair reads with BAM headers and number of mapped reads
7.9 years ago by abascalfederico ★ 1.2k
1
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1
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2.7k
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Answer: A: Identification of haplotype blocks
7.9 years ago by abascalfederico ★ 1.2k
0
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0
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3.4k
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Answer: A: Getting p-values for whether the allele frequencies from two or more populations
8.0 years ago by abascalfederico ★ 1.2k
1
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1
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3.5k
views
Answer: A: samtools merge respecting original read groups
8.3 years ago by abascalfederico ★ 1.2k
0
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0
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2.5k
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Answer: A: How to retrieve the paralogues for a limited taxonomic group
8.4 years ago by abascalfederico ★ 1.2k
0
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1
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2.0k
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Answer: A: Does any large resequencing project have a genuinely hg38 VCF?
8.4 years ago by abascalfederico ★ 1.2k
0
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0
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1.7k
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Answer: A: Simple question: obtaining GO terminology utilizing NCBI GI's
8.4 years ago by abascalfederico ★ 1.2k
0
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1
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2.6k
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Answer: A: How to avoid a phylogenetic bias testing a hypothesis on a big set of bacterial
8.5 years ago by abascalfederico ★ 1.2k
1
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1
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4.4k
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Answer: A: remove scaffold and other unplaced sequence before mapping ?
8.5 years ago by abascalfederico ★ 1.2k
0
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0
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1.9k
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Answer: A: Set gapopen and gapextend parameters for psiblast command line
8.5 years ago by abascalfederico ★ 1.2k
2
votes
1
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2.3k
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Answer: A: BLAST: One read matches same region multiple times
8.5 years ago by abascalfederico ★ 1.2k
0
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1
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3.6k
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Answer: A: Creating custom ALT references for BWA
8.5 years ago by abascalfederico ★ 1.2k
0
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0
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2.2k
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Answer: A: Problem while comparing three vcf files with vcf-compare
8.5 years ago by abascalfederico ★ 1.2k
2
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1
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3.3k
views
Answer: A: percentage of amino acids, normalize by background amino acid probability
8.5 years ago by abascalfederico ★ 1.2k
1
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1
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6.5k
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Answer: A: Map gene gain and loss in phylogenetic tree
8.5 years ago by abascalfederico ★ 1.2k
3
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1
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4.0k
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Answer: A: Protein coding transcripts with vep
8.5 years ago by abascalfederico ★ 1.2k
0
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1
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2.1k
views
Answer: Answer: choosing a model for each codon in jModeltest
updated 2.2 years ago by 44k • written 8.6 years ago by ★ 1.2k
1
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0
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2.2k
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Answer: A: Predicting 3D structure of a protein?
8.6 years ago by abascalfederico ★ 1.2k
2
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1
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3.3k
views
Answer: Answer: Fastest pairwise alignment for 10,000 sequences
updated 2.2 years ago by 44k • written 8.6 years ago by ★ 1.2k
54 results • Page 1 of 2
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