Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
Showing : questions
0
votes
0
replies
646
views
GFF/GTF: how to translate CDS genomic coordinates to protein coordinates
GTF GFF3
updated 2.8 years ago by 8.5k • written 2.8 years ago by ★ 1.2k
7
votes
6
replies
3.4k
views
Optical duplicates?
duplicate optical
updated 2.1 years ago by ▴ 60 • written 2.9 years ago by ★ 1.2k
3
votes
3
replies
5.4k
views
Program to calculate and add the NM tag to a bam file
bam NM
updated 3.3 years ago by 20 • written 6.8 years ago by ★ 1.2k
1
vote
2
replies
1.5k
views
Tool to segment genome according to SNP density?
hmm segmentation snp density
updated 4.4 years ago by 20 • written 6.5 years ago by ★ 1.2k
0
votes
0
replies
754
views
VCF human-chimp divergence?
vcf
4.6 years ago by abascalfederico ★ 1.2k
2
votes
4
replies
3.7k
views
Duplicated read names in Fastq file
next-gen-sequencing
updated 16 months ago by 43k • written 8.8 years ago by ★ 1.2k
3
votes
7
replies
2.3k
views
How to get a list of reads supporting a variant in R?
R bam
updated 6.2 years ago by 104k • written 6.2 years ago by ★ 1.2k
4
votes
2
replies
1.9k
views
Why ExAC used bwa aln instead of mem?
exac bwa
6.8 years ago by abascalfederico ★ 1.2k
6
votes
7
replies
12k
views
bedtools intersect bed and vcf, coordinates problem
bedtools bed vcf
7.0 years ago by abascalfederico ★ 1.2k
1
vote
2
replies
5.4k
views
Question about MD tag in BAM file
BAM MD
7.1 years ago by abascalfederico ★ 1.2k
1
vote
1
reply
1.8k
views
Definition of PCR duplicates based on alignment coordinates
PCR duplicates
7.1 years ago by abascalfederico ★ 1.2k
2
votes
4
replies
2.6k
views
Identification of haplotype blocks
haplotype blocks
7.5 years ago by abascalfederico ★ 1.2k
3
votes
0
replies
1.9k
views
Samtools' mpileup with pysam: enabling and disabling BAQ probabilistic realignment
samtools pysam mpileup
7.5 years ago by abascalfederico ★ 1.2k
5
votes
5
replies
2.3k
views
Software to identify overrepresented k-mers in sequencing data
sequencing k-mer
updated 7.6 years ago by 161k • written 7.6 years ago by ★ 1.2k
3
votes
3
replies
1.8k
views
best way to get chimp-human homologous sites
sequencing variants gvcf
7.8 years ago by abascalfederico ★ 1.2k
7
votes
5
replies
9.4k
views
strange issues with absent EOF markers in BAM files
samtools picard-tools bam eof
7.9 years ago by abascalfederico ★ 1.2k
2
votes
5
replies
3.4k
views
samtools merge respecting original read groups
samtools read groups
7.9 years ago by abascalfederico ★ 1.2k
2
votes
1
reply
2.3k
views
Uniquely mapped PAIRS of reads
bam samtools
updated 13 months ago by 43k • written 7.9 years ago by ★ 1.2k
6
votes
2
replies
4.1k
views
Illumina's HiSeq strange Phred quality score
phred illumina hiseq
updated 7.9 years ago by ▴ 630 • written 7.9 years ago by ★ 1.2k
4
votes
9
replies
3.2k
views
picard: error reading BAM file
bam htsjdk picard
updated 8.1 years ago by 13k • written 8.1 years ago by ★ 1.2k
1
vote
4
replies
1.6k
views
Ensembl API, something is making it choose an old version
Ensembl API compara version
updated 8.1 years ago by 23k • written 8.1 years ago by ★ 1.2k
1
vote
2
replies
1.8k
views
BioPython, PhyloXML and duplication nodes
phyloxml Biopython
updated 21 months ago by 43k • written 8.2 years ago by ★ 1.2k
3
votes
2
replies
2.3k
views
samtools mpileup: position of each base within their reads
samtools mpileup
updated 21 months ago by 43k • written 8.2 years ago by ★ 1.2k
9
votes
2
replies
5.5k
views
List of CNV (copy number variation) regions in the human genome
CNV human-genome
updated 21 months ago by 43k • written 8.2 years ago by ★ 1.2k
6
votes
2
replies
4.1k
views
Recode VCF file according to ancestral alleles (AA)
VCF
updated 21 months ago by 43k • written 8.3 years ago by ★ 1.2k
1
vote
2
replies
4.0k
views
F3 test for admixture
treeness admixture f3-test
updated 20 months ago by 43k • written 8.4 years ago by ★ 1.2k
26 results • Page 1 of 1
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6