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Showing :
questions
40
votes
35
replies
13k
views
10 follow
find positions of a short sequence in a genome
sequence
search
updated 8 months ago by
Mark
★ 1.5k • written 7.6 years ago by
igor
13k
3
votes
5
replies
1.1k
views
Enrichr gene set libraries info
enrichr
18 months ago by
igor
13k
12
votes
11
replies
10k
views
Detecting copy number alterations based on RNA-seq data
RNA-Seq
CNV
copy number
21 months ago by
igor
13k
2
votes
3
replies
949
views
single-cell consensus clustering
scrna-seq
FlowSOM
ConsensusClusterPlus
single-cell
21 months ago by
igor
13k
3
votes
2
replies
9.9k
views
survival analysis with a continuos variable
survival
R
updated 2.1 years ago by
snoops
• 0 • written 7.2 years ago by
igor
13k
5
votes
4
replies
7.0k
views
Calculate distances between items in different GRanges
R
bioconductor
granges
updated 2.3 years ago by
danielcgingerich
▴ 10 • written 7.2 years ago by
igor
13k
7
votes
7
replies
4.2k
views
RNA-seq ribosomal genes vs proteins
RNA-Seq
scRNA-seq
rRNA
updated 3.1 years ago by
predeus
★ 1.9k • written 3.1 years ago by
igor
13k
0
votes
2
replies
1.5k
views
bcftools call variant calling model
samtools
bcftools
3.3 years ago by
igor
13k
1
vote
1
reply
1.1k
views
interactive browser for single-cell RNA-seq data
scrna-seq
3.3 years ago by
igor
13k
2
votes
1
reply
2.2k
views
mouse chrY centromere location
genome
reference
3.8 years ago by
igor
13k
1
vote
2
replies
716
views
public file storage
storage
data
updated 4.2 years ago by
Alex Reynolds
35k • written 4.2 years ago by
igor
13k
33
votes
17
replies
1.5k
views
Non-computational challenges in bioinformatics
collaboration
4.2 years ago by
igor
13k
9
votes
29
replies
7.5k
views
8 follow
10x Supernova de novo assembly
Assembly
10x
updated 4.4 years ago by
samnioue
▴ 10 • written 7.4 years ago by
igor
13k
14
votes
5
replies
9.1k
views
smoothing or binning bigWig file
bigwig
updated 12 months ago by
rls_08
▴ 40 • written 7.4 years ago by
igor
13k
6
votes
3
replies
6.2k
views
log vs square-root transformation
RNA-Seq
normalization
updated 5.4 years ago by
Biostar
20 • written 5.4 years ago by
igor
13k
4
votes
3
replies
8.7k
views
TCGA/GDC FPKM vs FPKM-UQ
gdc
rna-seq
updated 5.4 years ago by
solo7773
▴ 90 • written 7.1 years ago by
igor
13k
1
vote
2
replies
1.7k
views
overlap BED files, but account for region name
bed
overlap
bedtools
updated 5.5 years ago by
Biostar
20 • written 6.8 years ago by
igor
13k
13
votes
9
replies
12k
views
6 follow
RNA-seq rRNA contamination
RNA-Seq
rRNA
updated 5.6 years ago by
GenoMax
141k • written 7.7 years ago by
igor
13k
16
votes
12
replies
2.9k
views
what happened to ea-utils?
ea-utils
fastq
updated 5.6 years ago by
Biostar
20 • written 7.7 years ago by
igor
13k
3
votes
8
replies
7.6k
views
DAVID Fisher Exact Test contingency table
pathway
stats
david
updated 5.9 years ago by
Poorya Parvizi
▴ 60 • written 6.9 years ago by
igor
13k
18
votes
12
replies
1.4k
views
addressing outdated software in paper reviews
software
5.9 years ago by
igor
13k
7
votes
8
replies
5.3k
views
lack of replicates in single-cell RNA-seq
RNA-Seq
scRNA-seq
single-cell
updated 5.9 years ago by
Friederike
8.9k • written 5.9 years ago by
igor
13k
50
votes
18
replies
36k
views
12 follow
ATAC-seq peak calling with MACS
atac-seq
macs
ChIP-Seq
peaks
updated 10 months ago by
Ram
43k • written 7.6 years ago by
igor
13k
14
votes
20
replies
6.9k
views
8 follow
Oxford Nanopore and Illumina hybrid assembly
nanopore
ont
Assembly
updated 6.0 years ago by
Carambakaracho
★ 3.2k • written 7.2 years ago by
igor
13k
0
votes
2
replies
1.2k
views
convert amino acids between species
gene
amino acid
homology
variants
6.0 years ago by
igor
13k
0
votes
0
replies
1.1k
views
retrieve genomic coordinates, amino acids, and exon numbers
gene
annotation
6.1 years ago by
igor
13k
0
votes
0
replies
1.8k
views
gnomAD variant frequencies by study
gnomad
exac
tcga
6.1 years ago by
igor
13k
2
votes
1
reply
1.5k
views
how trustable are KEGG pathways?
pathways
kegg
updated 6.3 years ago by
Mo
▴ 920 • written 6.3 years ago by
igor
13k
13
votes
11
replies
13k
views
biomaRt mmusculus_gene_ensembl dataset
biomart
updated 6.3 years ago by
Mike Smith
★ 2.0k • written 6.3 years ago by
igor
13k
8
votes
10
replies
8.3k
views
ENCODE ATAC-seq pipeline peak calling
atac-seq
updated 6.4 years ago by
Simply Bioinformatics
▴ 200 • written 7.6 years ago by
igor
13k
9
votes
5
replies
11k
views
samtools mpileup VCF output
samtools
updated 6.6 years ago by
Kevin Blighe
87k • written 8.0 years ago by
igor
13k
6
votes
1
reply
5.5k
views
GENCODE versus Ensembl gene annotations
ensembl
gencode
gtf
updated 6.6 years ago by
Astrid_Ensembl
▴ 330 • written 6.7 years ago by
igor
13k
3
votes
3
replies
3.8k
views
determine loss- or gain-of-function of specific mutation
snv
mutation
variant
updated 6.7 years ago by
mforde84
★ 1.4k • written 6.7 years ago by
igor
13k
1
vote
0
replies
3.8k
views
Control-FREEC - Segmentation fault (core dumped)
cnv
cna
freec
control-freec
updated 6.8 years ago by
Biostar
20 • written 7.0 years ago by
igor
13k
0
votes
2
replies
1.4k
views
counting sequences with fuzzy uniq (with mismatches)
unix
cli
7.0 years ago by
igor
13k
2
votes
8
replies
1.8k
views
gene set overlaps with ranks or weights
stats
R
updated 7.0 years ago by
Benn
8.3k • written 7.0 years ago by
igor
13k
5
votes
6
replies
5.9k
views
nucleosome positioning using ATAC-seq
nucleosome
atac-seq
updated 7.0 years ago by
BioinfGuru
★ 1.7k • written 7.3 years ago by
igor
13k
0
votes
0
replies
1.5k
views
search SRA or ENA for targeted sequencing data
sra
ena
updated 7.0 years ago by
Biostar
20 • written 7.1 years ago by
igor
13k
0
votes
0
replies
1.5k
views
Assign sample identities based on known gene signatures in RNA-seq data
RNA-Seq
7.1 years ago by
igor
13k
1
vote
1
reply
2.4k
views
Using kallisto for metagenomic analysis
metagenomics
kallisto
7.2 years ago by
igor
13k
4
votes
6
replies
1.1k
views
paired-end BAM file sequence search
sequence
alignment
updated 7.2 years ago by
Gabriel R.
★ 2.9k • written 7.2 years ago by
igor
13k
1
vote
4
replies
2.4k
views
Why is TCGA Genomic Data Commons missing some data?
tcga
7.3 years ago by
igor
13k
1
vote
4
replies
2.1k
views
WGBS/RRBS "incomplete" methylation
rrbs
wgbs
methylation
7.4 years ago by
igor
13k
7
votes
2
replies
2.8k
views
Is it possible to call variants (SNPs) with bisulfite data?
wgbs
rrbs
updated 7.4 years ago by
Devon Ryan
104k • written 7.4 years ago by
igor
13k
1
vote
8
replies
1.5k
views
trimming more than two paired mates
trim
fastq
7.4 years ago by
igor
13k
1
vote
1
reply
3.4k
views
BLASTing long sequence
blast
updated 7.5 years ago by
Ram
43k • written 7.5 years ago by
igor
13k
6
votes
6
replies
1.4k
views
Is there a term for a genome assembly that is not closed?
Assembly
genome
updated 7.5 years ago by
colindaven
6.3k • written 7.5 years ago by
igor
13k
4
votes
3
replies
1.9k
views
bedtools coverage double-counting
bedtools
updated 7.6 years ago by
harold.smith.tarheel
★ 4.9k • written 7.6 years ago by
igor
13k
1
vote
5
replies
3.6k
views
BWA barcode trimming and labeling
bwa
updated 7.7 years ago by
piet
★ 1.8k • written 7.7 years ago by
igor
13k
1
vote
1
reply
3.0k
views
read density plot in R
R
visualization
plot
updated 7.9 years ago by
Sinji
★ 3.2k • written 7.9 years ago by
igor
13k
70 results • Page
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