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60
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17
replies
31k
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16 follow
Scientific Names In Blast Output And Databases
blast blast+
updated 5 months ago by 39k • written 9.9 years ago by ★ 2.0k
0
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1
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3.3k
views
Answer: A: How do I blast against a specific portion of the nr database?
updated 3.4 years ago by 39k • written 9.1 years ago by ★ 2.0k
3
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0
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9.3k
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Answer: A: How to create a Blast database of viruses ?
updated 3.5 years ago by 39k • written 9.1 years ago by ★ 2.0k
2
votes
0
replies
16k
views
Answer: Answer: Workflow management software for pipeline development in NGS
updated 16 months ago by 39k • written 8.6 years ago by ★ 2.0k
2
votes
0
replies
2.0k
views
Answer: A: Looking for a working copy of Picard metric definitions page
updated 3.7 years ago by 39k • written 9.0 years ago by ★ 2.0k
152
votes
44
replies
29k
views
29 follow
Which Bioinformatic Friendly Pipeline Building Framework?
scripting
updated 11 months ago by 39k • written 9.4 years ago by ★ 2.0k
3
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0
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2.7k
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Answer: A: Alternative to VEP.
4.7 years ago by Carlos Borroto ★ 2.0k
3
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0
replies
1.0k
views
Answer: A: Bottleneck for scattered subworkflows
4.7 years ago by Carlos Borroto ★ 2.0k
0
votes
0
replies
4.5k
views
Comment: C: what tools to visualize structural variants VCF files?
updated 4.7 years ago by 39k • written 7.3 years ago by ★ 2.0k
2
votes
1
reply
4.5k
views
Answer: A: what tools to visualize structural variants VCF files?
updated 4.7 years ago by 39k • written 7.3 years ago by ★ 2.0k
6
votes
4
replies
3.3k
views
Is there a good way to test CWL tools and workflows?
cwl
updated 5.0 years ago by ▴ 390 • written 5.2 years ago by ★ 2.0k
0
votes
1
reply
31k
views
Comment: A: python script error: ImportError: No module named pysam
5.1 years ago by Carlos Borroto ★ 2.0k
0
votes
0
replies
4.9k
views
Answer: A: Problem Downloading The Nt Database From Ncbi
5.6 years ago by Carlos Borroto ★ 2.0k
1
vote
0
replies
9.2k
views
Answer: A: Difference Between Picards Mergebamalignment And Mergesamfiles
6.1 years ago by Carlos Borroto ★ 2.0k
0
votes
2
replies
26k
views
Comment: C: Introducing Clumpify: Create 30% Smaller, Faster Gzipped Fastq Files. And remov
6.3 years ago by Carlos Borroto ★ 2.0k
1
vote
0
replies
3.6k
views
Comment: C: Rsync and python for ftp.ncbi
7.0 years ago by Carlos Borroto ★ 2.0k
4
votes
2
replies
6.7k
views
Answer: A: How to calculate average coverage for all genes
7.0 years ago by Carlos Borroto ★ 2.0k
1
vote
0
replies
5.3k
views
Answer: A: Human GRCh38 and dbSNP VCF and GATK
7.0 years ago by Carlos Borroto ★ 2.0k
2
votes
1
reply
1.8k
views
Answer: A: How do I get the lengths of different regions targeted by the Nextera expanded r
7.1 years ago by Carlos Borroto ★ 2.0k
0
votes
0
replies
2.7k
views
Comment: C: UMI for Exome Target Sequencing
7.2 years ago by Carlos Borroto ★ 2.0k
1
vote
0
replies
3.2k
views
Answer: A: ClinVar local install
7.2 years ago by Carlos Borroto ★ 2.0k
1
vote
0
replies
29k
views
Answer: A: Which Bioinformatic Friendly Pipeline Building Framework?
7.2 years ago by Carlos Borroto ★ 2.0k
0
votes
1
reply
5.4k
views
Answer: A: How Successful are new Bioinformatics Software Companies?
7.2 years ago by Carlos Borroto ★ 2.0k
2
votes
0
replies
2.8k
views
Answer: A: Question about Variant Calling: Whole file VS multiple smaller files
7.2 years ago by Carlos Borroto ★ 2.0k
0
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1
reply
2.8k
views
Comment: C: Question about Variant Calling: Whole file VS multiple smaller files
7.2 years ago by Carlos Borroto ★ 2.0k
0
votes
0
replies
1.6k
views
Comment: C: Boston Genomics Hackathon (facilitated by NCBI)
7.2 years ago by Carlos Borroto ★ 2.0k
0
votes
1
reply
19k
views
Comment: C: Downloading multiple species from ftp.ncbi.nih.gov using wget and wildcards
7.2 years ago by Carlos Borroto ★ 2.0k
0
votes
1
reply
19k
views
Comment: C: Downloading multiple species from ftp.ncbi.nih.gov using wget and wildcards
7.2 years ago by Carlos Borroto ★ 2.0k
0
votes
0
replies
1.8k
views
Comment: C: Looking for a data base of functional SNPs.
7.2 years ago by Carlos Borroto ★ 2.0k
0
votes
1
reply
1.8k
views
Answer: A: Looking for a data base of functional SNPs.
7.3 years ago by Carlos Borroto ★ 2.0k
8
votes
2
replies
9.9k
views
Answer: A: FreeBayes vs GATK's HaplotypeCaller
7.4 years ago by Carlos Borroto ★ 2.0k
0
votes
1
reply
8.4k
views
Comment: C: Bait/Target files for Picard HsMetrics (Exome Sequencing)
7.8 years ago by Carlos Borroto ★ 2.0k
2
votes
3
replies
3.1k
views
How does samblaster use library tag information if at all?
samblaster markduplicates
updated 16 months ago by 39k • written 8.6 years ago by ★ 2.0k
3
votes
2
replies
19k
views
Answer: Answer: Downloading multiple species from ftp.ncbi.nih.gov using wget and wildcards
updated 16 months ago by 39k • written 8.6 years ago by ★ 2.0k
0
votes
1
reply
29k
views
Comment: C: Which Bioinformatic Friendly Pipeline Building Framework?
8.6 years ago by Carlos Borroto ★ 2.0k
0
votes
0
replies
3.1k
views
Comment: C: How does samblaster use library tag information if at all?
8.6 years ago by Carlos Borroto ★ 2.0k
2
votes
1
reply
2.0k
views
Looking for a working copy of Picard metric definitions page
picard
9.0 years ago by Carlos Borroto ★ 2.0k
5
votes
9
replies
3.9k
views
Why Is "-Knownsites" Option Required In Gkno'S "Gatk-Count-Covariates" Tool?
gatk
updated 9.0 years ago by 20 • written 10.1 years ago by ★ 2.0k
5
votes
1
reply
39k
views
Answer: A: Will Python Take The Place Of R?
9.1 years ago by Carlos Borroto ★ 2.0k
2
votes
1
reply
3.6k
views
Answer: A: Web-Browser-Based Sequence Alignment Visualization
9.2 years ago by Carlos Borroto ★ 2.0k
0
votes
0
replies
9.0k
views
Comment: C: How To Proper Fill Up @Rg (Readgroups) Information? Example?
9.3 years ago by Carlos Borroto ★ 2.0k
4
votes
1
reply
17k
views
Answer: A: How Do I Get Started Working With Rna-Seq Data
9.3 years ago by Carlos Borroto ★ 2.0k
1
vote
1
reply
9.0k
views
Comment: C: How To Proper Fill Up @Rg (Readgroups) Information? Example?
9.3 years ago by Carlos Borroto ★ 2.0k
13
votes
19
replies
9.0k
views
How To Proper Fill Up @Rg (Readgroups) Information? Example?
gatk picard
9.3 years ago by Carlos Borroto ★ 2.0k
1
vote
1
reply
9.0k
views
Answer: A: How To Proper Fill Up @Rg (Readgroups) Information? Example?
9.3 years ago by Carlos Borroto ★ 2.0k
0
votes
0
replies
9.0k
views
Comment: C: How To Proper Fill Up @Rg (Readgroups) Information? Example?
9.4 years ago by Carlos Borroto ★ 2.0k
0
votes
1
reply
9.0k
views
Comment: C: How To Proper Fill Up @Rg (Readgroups) Information? Example?
9.4 years ago by Carlos Borroto ★ 2.0k
0
votes
1
reply
9.0k
views
Comment: C: How To Proper Fill Up @Rg (Readgroups) Information? Example?
9.4 years ago by Carlos Borroto ★ 2.0k
0
votes
1
reply
9.0k
views
Comment: C: How To Proper Fill Up @Rg (Readgroups) Information? Example?
9.4 years ago by Carlos Borroto ★ 2.0k
0
votes
1
reply
9.0k
views
Comment: C: How To Proper Fill Up @Rg (Readgroups) Information? Example?
9.4 years ago by Carlos Borroto ★ 2.0k
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