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Scientific Names In Blast Output And Databases
blast blast+
updated 8 months ago by 40k • written 10.2 years ago by ★ 2.1k
0
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1
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3.4k
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Answer: A: How do I blast against a specific portion of the nr database?
updated 3.7 years ago by 40k • written 9.4 years ago by ★ 2.1k
3
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0
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9.5k
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Answer: A: How to create a Blast database of viruses ?
updated 3.8 years ago by 40k • written 9.4 years ago by ★ 2.1k
2
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0
replies
16k
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Answer: Answer: Workflow management software for pipeline development in NGS
updated 20 months ago by 40k • written 8.9 years ago by ★ 2.1k
2
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0
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2.1k
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Answer: A: Looking for a working copy of Picard metric definitions page
updated 4.0 years ago by 40k • written 9.3 years ago by ★ 2.1k
155
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44
replies
30k
views
29 follow
Which Bioinformatic Friendly Pipeline Building Framework?
scripting
updated 15 months ago by 40k • written 9.7 years ago by ★ 2.1k
3
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0
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2.9k
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Answer: A: Alternative to VEP.
5.0 years ago by Carlos Borroto ★ 2.1k
3
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0
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1.1k
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Answer: A: Bottleneck for scattered subworkflows
5.0 years ago by Carlos Borroto ★ 2.1k
0
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0
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4.7k
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Comment: C: what tools to visualize structural variants VCF files?
updated 5.0 years ago by 40k • written 7.6 years ago by ★ 2.1k
2
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1
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4.7k
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Answer: A: what tools to visualize structural variants VCF files?
updated 5.0 years ago by 40k • written 7.6 years ago by ★ 2.1k
6
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4
replies
3.4k
views
Is there a good way to test CWL tools and workflows?
cwl
updated 5.3 years ago by ▴ 390 • written 5.5 years ago by ★ 2.1k
0
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1
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32k
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Comment: A: python script error: ImportError: No module named pysam
5.4 years ago by Carlos Borroto ★ 2.1k
0
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0
replies
5.1k
views
Answer: A: Problem Downloading The Nt Database From Ncbi
5.9 years ago by Carlos Borroto ★ 2.1k
1
vote
0
replies
9.4k
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Answer: A: Difference Between Picards Mergebamalignment And Mergesamfiles
6.4 years ago by Carlos Borroto ★ 2.1k
0
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2
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27k
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Comment: C: Introducing Clumpify: Create 30% Smaller, Faster Gzipped Fastq Files. And remov
6.6 years ago by Carlos Borroto ★ 2.1k
1
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0
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3.7k
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Comment: C: Rsync and python for ftp.ncbi
7.3 years ago by Carlos Borroto ★ 2.1k
4
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2
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7.0k
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Answer: A: How to calculate average coverage for all genes
7.3 years ago by Carlos Borroto ★ 2.1k
1
vote
0
replies
5.4k
views
Answer: A: Human GRCh38 and dbSNP VCF and GATK
7.3 years ago by Carlos Borroto ★ 2.1k
2
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1
reply
1.9k
views
Answer: A: How do I get the lengths of different regions targeted by the Nextera expanded r
7.4 years ago by Carlos Borroto ★ 2.1k
0
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0
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2.8k
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Comment: C: UMI for Exome Target Sequencing
7.5 years ago by Carlos Borroto ★ 2.1k
1
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0
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3.3k
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Answer: A: ClinVar local install
7.5 years ago by Carlos Borroto ★ 2.1k
1
vote
0
replies
30k
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Answer: A: Which Bioinformatic Friendly Pipeline Building Framework?
7.5 years ago by Carlos Borroto ★ 2.1k
0
votes
1
reply
5.7k
views
Answer: A: How Successful are new Bioinformatics Software Companies?
7.5 years ago by Carlos Borroto ★ 2.1k
2
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0
replies
2.9k
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Answer: A: Question about Variant Calling: Whole file VS multiple smaller files
7.5 years ago by Carlos Borroto ★ 2.1k
0
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1
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2.9k
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Comment: C: Question about Variant Calling: Whole file VS multiple smaller files
7.5 years ago by Carlos Borroto ★ 2.1k
0
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0
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1.7k
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Comment: C: Boston Genomics Hackathon (facilitated by NCBI)
7.5 years ago by Carlos Borroto ★ 2.1k
0
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1
reply
20k
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Comment: C: Downloading multiple species from ftp.ncbi.nih.gov using wget and wildcards
7.5 years ago by Carlos Borroto ★ 2.1k
0
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1
reply
20k
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Comment: C: Downloading multiple species from ftp.ncbi.nih.gov using wget and wildcards
7.5 years ago by Carlos Borroto ★ 2.1k
0
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0
replies
1.9k
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Comment: C: Looking for a data base of functional SNPs.
7.5 years ago by Carlos Borroto ★ 2.1k
0
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1
reply
1.9k
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Answer: A: Looking for a data base of functional SNPs.
7.6 years ago by Carlos Borroto ★ 2.1k
8
votes
2
replies
10k
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Answer: A: FreeBayes vs GATK's HaplotypeCaller
7.7 years ago by Carlos Borroto ★ 2.1k
0
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1
reply
8.8k
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Comment: C: Bait/Target files for Picard HsMetrics (Exome Sequencing)
8.1 years ago by Carlos Borroto ★ 2.1k
2
votes
3
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3.2k
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How does samblaster use library tag information if at all?
samblaster markduplicates
updated 20 months ago by 40k • written 8.9 years ago by ★ 2.1k
3
votes
2
replies
20k
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Answer: Answer: Downloading multiple species from ftp.ncbi.nih.gov using wget and wildcards
updated 20 months ago by 40k • written 8.9 years ago by ★ 2.1k
0
votes
1
reply
30k
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Comment: C: Which Bioinformatic Friendly Pipeline Building Framework?
8.9 years ago by Carlos Borroto ★ 2.1k
0
votes
0
replies
3.2k
views
Comment: C: How does samblaster use library tag information if at all?
8.9 years ago by Carlos Borroto ★ 2.1k
2
votes
1
reply
2.1k
views
Looking for a working copy of Picard metric definitions page
picard
9.3 years ago by Carlos Borroto ★ 2.1k
5
votes
9
replies
4.0k
views
Why Is "-Knownsites" Option Required In Gkno'S "Gatk-Count-Covariates" Tool?
gatk
updated 9.3 years ago by 20 • written 10.4 years ago by ★ 2.1k
5
votes
1
reply
39k
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Answer: A: Will Python Take The Place Of R?
9.4 years ago by Carlos Borroto ★ 2.1k
2
votes
1
reply
3.7k
views
Answer: A: Web-Browser-Based Sequence Alignment Visualization
9.5 years ago by Carlos Borroto ★ 2.1k
0
votes
0
replies
9.4k
views
Comment: C: How To Proper Fill Up @Rg (Readgroups) Information? Example?
9.6 years ago by Carlos Borroto ★ 2.1k
4
votes
1
reply
18k
views
Answer: A: How Do I Get Started Working With Rna-Seq Data
9.6 years ago by Carlos Borroto ★ 2.1k
1
vote
1
reply
9.4k
views
Comment: C: How To Proper Fill Up @Rg (Readgroups) Information? Example?
9.7 years ago by Carlos Borroto ★ 2.1k
13
votes
19
replies
9.4k
views
How To Proper Fill Up @Rg (Readgroups) Information? Example?
gatk picard
9.7 years ago by Carlos Borroto ★ 2.1k
1
vote
1
reply
9.4k
views
Answer: A: How To Proper Fill Up @Rg (Readgroups) Information? Example?
9.7 years ago by Carlos Borroto ★ 2.1k
0
votes
0
replies
9.4k
views
Comment: C: How To Proper Fill Up @Rg (Readgroups) Information? Example?
9.7 years ago by Carlos Borroto ★ 2.1k
0
votes
1
reply
9.4k
views
Comment: C: How To Proper Fill Up @Rg (Readgroups) Information? Example?
9.7 years ago by Carlos Borroto ★ 2.1k
0
votes
1
reply
9.4k
views
Comment: C: How To Proper Fill Up @Rg (Readgroups) Information? Example?
9.7 years ago by Carlos Borroto ★ 2.1k
0
votes
1
reply
9.4k
views
Comment: C: How To Proper Fill Up @Rg (Readgroups) Information? Example?
9.7 years ago by Carlos Borroto ★ 2.1k
0
votes
1
reply
9.4k
views
Comment: C: How To Proper Fill Up @Rg (Readgroups) Information? Example?
9.7 years ago by Carlos Borroto ★ 2.1k
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