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Answer: Answer: GEO dataset extraction
7 months ago by seidel 11k
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570
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Answer: Answer: MACS2 peak calling and drug treatment
8 months ago by seidel 11k
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585
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Answer: Answer: Plotting Genomic Coordinates
9 months ago by seidel 11k
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1.8k
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Answer: Answer: BAM File: Trim Reads So Only First Base Remains
10 months ago by seidel 11k
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1.0k
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Answer: Answer: Normalization of RNA transcript abundance data
10 months ago by seidel 11k
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1.2k
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Answer: Answer: how to create correlation matrix R
10 months ago by seidel 11k
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3.3k
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Answer: Answer: R scripting
12 months ago by seidel 11k
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892
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Answer: Answer: Is the same order when using p value or q value for compareCluster analysis?
12 months ago by seidel 11k
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735
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Answer: Answer: View all rows in R studio RNASeq
updated 12 months ago by 43k • written 12 months ago by 11k
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506
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Answer: Answer: using GRanges metadata to constrain overlap searches between objects
12 months ago by seidel 11k
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992
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Answer: Answer: colouring variables in r
13 months ago by seidel 11k
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985
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Answer: Answer: Extract gene sequences from multiple fasta using a list from a file:
14 months ago by seidel 11k
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813
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Answer: Answer: Why am I getting only one common value when comparing two excel files?
14 months ago by seidel 11k
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3.2k
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Answer: Answer: How to download all Gene Ontology (GO) IDs with their associated vocabulary?
14 months ago by seidel 11k
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1.1k
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Answer: Answer: Can someone help me search the minimal value of a two column csv file with a sin
14 months ago by seidel 11k
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737
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Answer: Answer: Removing (stubborn) new line from Fasta file sequence?
15 months ago by seidel 11k
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1.4k
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Answer: Answer: How to remove uncharacterized chromosomes from GTF file?
15 months ago by seidel 11k
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1.4k
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Answer: Answer: How to configure a data set with mouse data to one with human gene names using a
15 months ago by seidel 11k
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1.7k
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Answer: Answer: gene symbol not showing for ensembl gene ids using biomart
15 months ago by seidel 11k
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1.4k
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Answer: Answer: make volcano plot from multiple dataframes with same genes and different foldcha
15 months ago by seidel 11k
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711
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Answer: Answer: Can I get the read length from the count data file in R? How?
15 months ago by seidel 11k
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5.7k
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Answer: Answer: pheatmap: adding row label instead of row names
15 months ago by seidel 11k
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953
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Answer: Answer: how to create a metagene plot for different features of genes?
16 months ago by seidel 11k
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488
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Answer: Answer: Rename Fasta header by Regular expression
16 months ago by seidel 11k
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1.1k
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Answer: Answer: ChIP-seq problem
16 months ago by seidel 11k
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937
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Answer: Answer: Merging and intersecting genomic ranges for an indefinite number of files
16 months ago by seidel 11k
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1.2k
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Answer: Answer: find top expressed genes under one specific object
16 months ago by seidel 11k
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742
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Answer: Answer: Purpose of Seqinfo Circularity Attribute in GenomicRanges Objects
16 months ago by seidel 11k
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706
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Answer: Answer: Non-adjusted p-value used in publication
16 months ago by seidel 11k
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598
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Answer: Answer: How to rename sequence headers
16 months ago by seidel 11k
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612
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Answer: Answer: Statistic analysis on overlap between RNA-seq and ChIP-seq dataset
16 months ago by seidel 11k
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1.9k
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Answer: Answer: Mean read length from bam file
16 months ago by seidel 11k
3
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829
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Answer: Answer: Questions about supplementary file contents of a GEO dataset
16 months ago by seidel 11k
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985
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Answer: Answer: microarray differential expression analyses - probe names to gene symbols
17 months ago by seidel 11k
3
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913
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Answer: Answer: Error while converting a bed to bigBed file
17 months ago by seidel 11k
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707
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Answer: Answer: How to control width of my boxplots?
17 months ago by seidel 11k
2
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2
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2.4k
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Answer: Answer: The Duplicates Dilemma of ChIP-Seq
17 months ago by seidel 11k
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535
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Answer: Answer: Microarray Database
17 months ago by seidel 11k
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2.7k
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Answer: Answer: Why doesn't grep work when used on a gzipped (.gz) VCF file
18 months ago by seidel 11k
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0
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603
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Answer: Answer: separate read1 and read2 from merged fastq file and align against reference geno
18 months ago by seidel 11k
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461
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Answer: Answer: How to know runs are technical repeats
19 months ago by seidel 11k
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2
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942
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Answer: Answer: Using Bedtools coverage for a single alignment file?
19 months ago by seidel 11k
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543
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Answer: Answer: Normalizing read counts while having multiple group of samples with different co
19 months ago by seidel 11k
2
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1
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636
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Answer: Answer: quantify how many reads detect ORF9 and ORF10
21 months ago by seidel 11k
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1
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930
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Answer: Answer: Code to find the list of genes in the DEG table in R?
22 months ago by seidel 11k
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0
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541
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Answer: Answer: How to do RNA-Seq metadata analysis?
23 months ago by seidel 11k
2
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1
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1.5k
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Answer: Answer: Can I successfully go from a bed file (narrowpeak) back to a bam file containing
23 months ago by seidel 11k
2
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0
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809
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Answer: Answer: RNA-Seq with more conditions
23 months ago by seidel 11k
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0
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842
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Answer: Answer: Bowtie produced empty .sam file
2.0 years ago by seidel 11k
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0
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785
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Answer: Answer: RNA-Sequencing on RStudio vs batch scripts on Terminal
2.1 years ago by seidel 11k
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