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Answer: Answer: Counts vs TPM - Comparing gene expression within a sample
2.2 years ago by seidel 11k
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Answer: Answer: How to speed up averaging peak signal overlapping with domains
2.2 years ago by seidel 11k
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736
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Answer: Answer: Is there any way to determine if a gene is due to contamination?
2.2 years ago by seidel 11k
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643
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Answer: Answer: compare the background levels in two chip-seq experiments
2.2 years ago by seidel 11k
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1.1k
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Answer: Answer: Filter query coverage
2.2 years ago by seidel 11k
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1.0k
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Answer: Answer: need to remove some part of header fasta file
2.2 years ago by seidel 11k
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1.2k
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Answer: Answer: Positions in Sam file
2.2 years ago by seidel 11k
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Answer: Answer: Remove the intron peaks from the genome browser
2.3 years ago by seidel 11k
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Answer: Answer: Does anyone know how to create a sequence annotation figure like this?
2.3 years ago by seidel 11k
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Answer: Answer: Do you need a genome or can a transcriptome alone be used to identify biosynthet
2.3 years ago by seidel 11k
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961
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Answer: Answer: How to count the same character in R
2.3 years ago by seidel 11k
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Answer: Answer: RPM in ChIP-seq analysis
2.3 years ago by seidel 11k
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594
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Answer: Answer: What is the principle of samtools depth？
2.3 years ago by seidel 11k
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838
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Answer: Answer: are there some software to compute depth？
2.3 years ago by seidel 11k
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1.8k
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Answer: Answer: Change log2FoldChange range - plotMA
2.3 years ago by seidel 11k
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1.8k
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Answer: Answer: how to align paired and unpaired fastq files of a sample using STAR?
2.3 years ago by seidel 11k
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Answer: Answer: Not getting annotated colours in the row annotation in pheatmap
2.3 years ago by seidel 11k
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1.7k
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Answer: Answer: Telling apart control and treatment groups in Seurat Visualizations
2.3 years ago by seidel 11k
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Answer: Answer: heatmap annotation
2.3 years ago by seidel 11k
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816
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Answer: Answer: Gene expression value
2.3 years ago by seidel 11k
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1.2k
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Answer: Answer: How to convert bedgraph file with bins into GRanges object?
2.3 years ago by seidel 11k
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Answer: Answer: Assigning row annotations to pheatmap
2.3 years ago by seidel 11k
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Answer: Answer: What does sequence-dependent mean?
2.4 years ago by seidel 11k
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3.9k
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Answer: Answer: No color key in my heatmap with heatmap2.
2.4 years ago by seidel 11k
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718
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Answer: Answer: Generating multiple heatmaps with heatmap3 and lapply
2.4 years ago by seidel 11k
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587
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Answer: Answer: Making a FASTA file from a segment of a DNA sequence
2.4 years ago by seidel 11k
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Answer: Answer: sam to bam then delete sam file
2.4 years ago by seidel 11k
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632
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Answer: Answer: kegg pathway
2.4 years ago by seidel 11k
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Answer: Answer: Gene Ontology
2.4 years ago by seidel 11k
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Answer: Answer: How can I load numerous files from a config file in Snakemake? Is it worth it ?
2.4 years ago by seidel 11k
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2.9k
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Answer: Answer: Bedtools - converting multiple bam files to bed
2.6 years ago by seidel 11k
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2.0k
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Answer: Answer: Can I use the summits.bed from MACS2 on HOMER
2.6 years ago by seidel 11k
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902
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Answer: Answer: Can we use basespace illumina link instead of https://www.ebi.ac.uk/ in our pap
2.6 years ago by seidel 11k
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966
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Answer: Answer: up-down regulated using log2FC
2.6 years ago by seidel 11k
6
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11k
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Answer: Answer: Downsample BAM file to specific amount of reads
2.7 years ago by seidel 11k
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4.2k
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Answer: Answer: how do I add a title to an Upset plots
2.7 years ago by seidel 11k
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2.5k
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Answer: Answer: R Programming - how to make a simple heat map
2.7 years ago by seidel 11k
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891
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Answer: Answer: How do you perform in silico PCR ?
2.7 years ago by seidel 11k
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818
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Answer: Answer: Exonerate
2.7 years ago by seidel 11k
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1.4k
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Answer: Answer: Reading and normalizing raw data on R
2.8 years ago by seidel 11k
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813
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Answer: Answer: What is Isoform Ratio ?
2.8 years ago by seidel 11k
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2.2k
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Answer: Answer: logFC or logCPM?
2.8 years ago by seidel 11k
4
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1.5k
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Answer: Answer: what are the reasons to find so few Differentially expressed genes (DEGs)?
2.8 years ago by seidel 11k
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697
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Answer: Answer: fpkm values mismatch
2.8 years ago by seidel 11k
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3.2k
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Answer: Answer: Looping over a function in R, and needing a variable name to save output as uniq
2.8 years ago by seidel 11k
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1.0k
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Answer: Answer: Filtering duplicates with MACS2 after re-sequencing a sample to increase read de
updated 2.8 years ago by 43k • written 2.8 years ago by 11k
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2.5k
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Answer: Answer: Which R function can be used for intersection of genomic coordinates from one fi
2.8 years ago by seidel 11k
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1.1k
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Answer: Answer: Compare gene coverage across group o samples
2.8 years ago by seidel 11k
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897
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Answer: Answer: bowtie2 unaligned option not writing to file
2.9 years ago by seidel 11k
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1.1k
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Answer: Answer: What does “non-log-linear space” mean for genomic data?
2.9 years ago by seidel 11k
328 results • Page 2 of 7
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