User: mafireyi

gravatar for mafireyi
mafireyi80
Reputation:
80
Status:
New User
Location:
South Africa
Last seen:
4 months, 1 week ago
Joined:
4 years, 11 months ago
Email:
m*******@gmail.com

Posts by mafireyi

<prev • 29 results • page 1 of 3 • next >
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Comment: C: Atlas -link inputs
... Hi No I havent. I ended up using a very good scaffolder called PEP scaffolder in and tried Soap GapCloser and SSPACE too ...
written 2.7 years ago by mafireyi80
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Comment: C: Braker output into maker (Annotation)
... Just noticed that now too. Have you found a solution for that? ...
written 3.5 years ago by mafireyi80
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Switching RepeatMasker off in Maker-P
... Hi I am annotating a new plant genome and using the Maker-P pipeline. I have created a custom library using RepeatModeler and the assembled genome and used RepeatMasker to softmask the genome. I want to use this masked genome as input in Maker and not re-do the RepeatMasking. My question is, is it ...
assembly written 3.5 years ago by mafireyi80 • updated 2.1 years ago by mss30
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Comment: C: Training Augustus for Maker
... and if u have proteins from a closely related organism? ...
written 3.7 years ago by mafireyi80
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Maker3 install error: flock: function not implemented
... Hi, I am trying to install Maker 3 with mph on my local machine on the HPC. I have installed all the other prerequisites including mpich2. When I run the command : ./Build install I get the following error flock: Function not implemented at /mnt/lustre/users/gmafireyi/Maker3/maker/src/lib/Paralle ...
assembly written 3.7 years ago by mafireyi80 • updated 21 months ago by yoce_pf50
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Comment: C: Special characters in the metassembler assembly
... Thanks a lot. That helped ...
written 3.7 years ago by mafireyi80
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Answer: A: Training Augustus for Maker
... Hi. You can use BRAKER to train Augustus. See a previous discussion on this here https://www.biostars.org/p/194149/#194183 ...
written 3.7 years ago by mafireyi80
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Special characters in the metassembler assembly
... Hi I have assembled a genome using 2 assemblers (Allpaths and MaSurCA) and used Metassembler to merge them. The metassembler has special characters with in it,RYKMSWBD. Does anyone know which bases they represent. Thanks ...
assembly written 3.7 years ago by mafireyi80 • updated 3.7 years ago by RamRS27k
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Comment: C: Masurca disk space issue
... Thanks a lot. Let me delete those and see what happens ...
written 3.7 years ago by mafireyi80
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Masurca disk space issue
... Hi I am running Masurca on a 380MBp genome. I have 861G of disk space and masurca fails writes 818G to this disk. I read you can free some space and re-run the assembler so that it continues from where it left off. My question is, which files are safe to delete from the various output files. Thank ...
assembly written 3.7 years ago by mafireyi80 • updated 3.7 years ago by caizexi12360

Latest awards to mafireyi

Popular Question 21 months ago, created a question with more than 1,000 views. For Which Flash output file do you use in Soap denovo assembly
Popular Question 21 months ago, created a question with more than 1,000 views. For RunAllPaths saying ValidateAllPathsInputs: command not found
Popular Question 21 months ago, created a question with more than 1,000 views. For Lastz.... using the xmask option
Student 21 months ago, asked a question with at least 3 up-votes. For Braker output into maker (Annotation)
Popular Question 2.3 years ago, created a question with more than 1,000 views. For Which Flash output file do you use in Soap denovo assembly
Popular Question 2.3 years ago, created a question with more than 1,000 views. For RunAllPaths saying ValidateAllPathsInputs: command not found
Popular Question 3.3 years ago, created a question with more than 1,000 views. For Braker output into maker (Annotation)

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