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Comment: Comment: Differential gene expression (aiming to create heatmap) for raw RNAseq count dat
8 weeks ago by Chirag Parsania ★ 2.0k
2
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1.1k
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Comment: Comment: How to make line graph with circles in R
19 months ago by Chirag Parsania ★ 2.0k
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0
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406
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miRNA KD/KO data in public domain
public-data miRNA
19 months ago by Chirag Parsania ★ 2.0k
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0
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695
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Comment: Comment: Fungal database or gene catalog
19 months ago by Chirag Parsania ★ 2.0k
1
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513
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Tool: FungiExpresZ: an intuitive package for fungal gene expression data analysis, visualization and discovery
r gene-expression RNA-seq fungi
updated 19 months ago by 44k • written 20 months ago by ★ 2.0k
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5.9k
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Comment: Comment: Write excel file formatted as Table in R
2.1 years ago by Chirag Parsania ★ 2.0k
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0
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2.7k
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Answer: Answer: Filter genes of interest from GTF file on R
2.6 years ago by Chirag Parsania ★ 2.0k
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0
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1.4k
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Comment: Comment: biomart and rtracklayer
2.6 years ago by Chirag Parsania ★ 2.0k
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0
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612
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Comment: Comment: How to visualize ranked gene expression across samples for RNA-seq?
2.7 years ago by Chirag Parsania ★ 2.0k
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0
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1.2k
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Comment: Comment: generate all combinations of strings from regular expression in R
2.8 years ago by Chirag Parsania ★ 2.0k
1
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2
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1.2k
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generate all combinations of strings from regular expression in R
regularexpression R
2.8 years ago by Chirag Parsania ★ 2.0k
3
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1
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859
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Bioconductor package specific website
Bioconductor Rstats R
updated 3.2 years ago by ★ 1.2k • written 3.2 years ago by ★ 2.0k
5
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2
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726
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NCBI genome stats
genome stats ncbi
updated 3.6 years ago by 146k • written 3.6 years ago by ★ 2.0k
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0
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1.1k
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Comment: C: Looking for Bioinformatician in Neuroscience to PORT Polish Center for Technolog
4.1 years ago by Chirag Parsania ★ 2.0k
1
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1
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1.7k
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Comment: C: Gene Ontology Database
4.2 years ago by Chirag Parsania ★ 2.0k
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2
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1.5k
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Comment: C: Get summary of aligned sequences
4.4 years ago by Chirag Parsania ★ 2.0k
0
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1
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1.5k
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Comment: C: Get summary of aligned sequences
4.4 years ago by Chirag Parsania ★ 2.0k
1
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6
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1.5k
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Get summary of aligned sequences
sequence alignment fasta
4.4 years ago by Chirag Parsania ★ 2.0k
0
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0
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891
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Comment: C: plot tss profile
4.5 years ago by Chirag Parsania ★ 2.0k
5
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0
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1.2k
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Tool: TidyWrappers : an R package to deal with an object tbl
ChIP-Seq wrappers R RNA-Seq gene-expression
updated 16 months ago by 44k • written 4.5 years ago by ★ 2.0k
1
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0
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711
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Comment: C: Empty .fa file after fa_some_records
4.5 years ago by Chirag Parsania ★ 2.0k
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0
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1.9k
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Comment: C: Reading a tab separated file
4.5 years ago by Chirag Parsania ★ 2.0k
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0
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986
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Comment: C: Removal of sequences that is partial of a longer sequences in multifasta file
4.5 years ago by Chirag Parsania ★ 2.0k
2
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1
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3.1k
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Answer: A: Qcov Vs QcovHSP
4.5 years ago by Chirag Parsania ★ 2.0k
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0
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3.5k
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Comment: C: FASTA file split
4.5 years ago by Chirag Parsania ★ 2.0k
0
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0
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1.1k
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Comment: C: How to get the response variable from gbm model when train.fraction is <1 ?
4.6 years ago by Chirag Parsania ★ 2.0k
0
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1
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1.3k
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Comment: C: NGSseq heatmap RStudio
4.6 years ago by Chirag Parsania ★ 2.0k
0
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1
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2.0k
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Comment: C: How to check quality of multiple sequence alignment (MSA)?
4.6 years ago by Chirag Parsania ★ 2.0k
1
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3
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2.0k
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How to check quality of multiple sequence alignment (MSA)?
MSA multiple-sequence-alignment R
updated 17 months ago by 44k • written 4.6 years ago by ★ 2.0k
1
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1
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1.7k
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Answer: Answer: How to check for the presence/absence of unique rows in two different matrices?
4.7 years ago by Chirag Parsania ★ 2.0k
1
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0
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4.8k
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Answer: A: How to get Taxonomy and Taxon ID for an Accession number using R/Python?
4.7 years ago by Chirag Parsania ★ 2.0k
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0
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10k
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Comment: C: MrBayes: Implementing the LG model
4.8 years ago by Chirag Parsania ★ 2.0k
3
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1
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3.8k
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Answer: A: Is there any differences between tophat, cufflinks command with and without GTF
updated 4.9 years ago by 44k • written 8.9 years ago by ★ 2.0k
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1
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4.4k
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Comment: C: Should I filter my reads before running bedtools multicov ?
updated 4.9 years ago by 44k • written 8.9 years ago by ★ 2.0k
0
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1
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4.4k
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Comment: C: Should I filter my reads before running bedtools multicov ?
updated 4.9 years ago by 44k • written 8.9 years ago by ★ 2.0k
0
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0
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1.8k
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Answer: A: Data Vizualization or Pathway Analysis
updated 4.9 years ago by 44k • written 8.9 years ago by ★ 2.0k
1
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1
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1.4k
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Answer: A: Obtaining nucleotide sequences from a set of protein identifiers
4.9 years ago by Chirag Parsania ★ 2.0k
0
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0
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8.4k
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Comment: C: How to find intron co-ordinates from the gff file?
updated 4.9 years ago by 44k • written 8.9 years ago by ★ 2.0k
0
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1
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8.4k
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Comment: C: How to find intron co-ordinates from the gff file?
updated 4.9 years ago by 44k • written 8.9 years ago by ★ 2.0k
0
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0
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8.4k
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Comment: C: How to find intron co-ordinates from the gff file?
updated 4.9 years ago by 44k • written 8.9 years ago by ★ 2.0k
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0
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2.2k
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Comment: C: Data with only 1 pair for DEG analysis
updated 4.9 years ago by 44k • written 8.9 years ago by ★ 2.0k
0
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1
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2.2k
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Comment: C: Data with only 1 pair for DEG analysis
updated 4.9 years ago by 44k • written 8.9 years ago by ★ 2.0k
0
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1
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2.2k
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Answer: A: Data with only 1 pair for DEG analysis
updated 4.9 years ago by 44k • written 8.9 years ago by ★ 2.0k
1
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1
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8.3k
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Comment: C: Plotting a line graph using the ggplot2 for multiple columns (genes)
4.9 years ago by Chirag Parsania ★ 2.0k
1
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1
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8.3k
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Comment: C: Plotting a line graph using the ggplot2 for multiple columns (genes)
4.9 years ago by Chirag Parsania ★ 2.0k
1
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0
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2.3k
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Answer: A: Extract sequences consecutively from a large fasta files and save in new fasta f
4.9 years ago by Chirag Parsania ★ 2.0k
0
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0
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1.3k
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Comment: C: Mapping common identifiers between two files
4.9 years ago by Chirag Parsania ★ 2.0k
6
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2
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1.6k
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Answer: A: How can I separate column names in to different columns to perform downstream an
5.0 years ago by Chirag Parsania ★ 2.0k
8
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1
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19k
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Answer: C: Could you please explain Fold change, % of change, and log2 fold change (L2FC) t
5.0 years ago by Chirag Parsania ★ 2.0k
2
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1
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2.2k
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Answer: C: ggplot density plot across bed file
updated 5.1 years ago by 12k • written 5.1 years ago by ★ 2.0k
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