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miRNA KD/KO data in public domain
public-data
miRNA
19 months ago by
Chirag Parsania
★ 2.0k
1
vote
2
replies
1.1k
views
generate all combinations of strings from regular expression in R
regularexpression
R
2.8 years ago by
Chirag Parsania
★ 2.0k
3
votes
1
reply
849
views
Bioconductor package specific website
Bioconductor
Rstats
R
updated 3.2 years ago by
LluĂs R.
★ 1.2k • written 3.2 years ago by
Chirag Parsania
★ 2.0k
5
votes
2
replies
719
views
NCBI genome stats
genome
stats
ncbi
updated 3.5 years ago by
GenoMax
145k • written 3.5 years ago by
Chirag Parsania
★ 2.0k
1
vote
6
replies
1.4k
views
Get summary of aligned sequences
sequence
alignment
fasta
4.4 years ago by
Chirag Parsania
★ 2.0k
1
vote
3
replies
2.0k
views
How to check quality of multiple sequence alignment (MSA)?
MSA
multiple-sequence-alignment
R
updated 16 months ago by
Ram
44k • written 4.5 years ago by
Chirag Parsania
★ 2.0k
3
votes
11
replies
1.9k
views
Get cDNA sequences from NCBI for given protein IDs
ncbi
proteinid
cdna
5.1 years ago by
Chirag Parsania
★ 2.0k
0
votes
5
replies
1.4k
views
R bioconductor package `rtracklayer` possible memory leakage
gff
R
bioconductor
memory leakage
5.9 years ago by
Chirag Parsania
★ 2.0k
7
votes
5
replies
27k
views
Z-Score calculation by heatmap.2
R
z-score
heatmap
updated 6.1 years ago by
Kevin Blighe
88k • written 8.6 years ago by
Chirag Parsania
★ 2.0k
5
votes
3
replies
6.1k
views
How does ggtree interprets branch support value (e.g bootstrap value) given as node label?
ggtree
phylogenetic
newick
R
3.5 years ago by
Chirag Parsania
★ 2.0k
3
votes
3
replies
3.8k
views
Pairwise distance of rooted phylogenetic tree
iqtree
phylogenetic
pair wise distance
rooted tree
6.2 years ago by
Chirag Parsania
★ 2.0k
8
votes
5
replies
5.2k
views
For a given set of NCBI taxonomy ids / species names, how to derive their species to species distance matrix ?
phylogeny
taxonomy
species distance
6.3 years ago by
Chirag Parsania
★ 2.0k
2
votes
11
replies
3.2k
views
How to improve existing transcriptome annotation using cufflink protocol ?
Assembly
transcriptome
cufflink
cuffmerge
updated 6.5 years ago by
colindaven
6.7k • written 7.3 years ago by
Chirag Parsania
★ 2.0k
3
votes
8
replies
2.6k
views
blastdbcmd taxonomy id conflict
blastp
localblast
taxonomyid
updated 6.6 years ago by
lieven.sterck
15k • written 6.6 years ago by
Chirag Parsania
★ 2.0k
2
votes
5
replies
1.8k
views
How to identify bacteria habitats by taxon id or its name
bacteria
ecology
habitats
updated 7.0 years ago by
5heikki
11k • written 7.0 years ago by
Chirag Parsania
★ 2.0k
5
votes
11
replies
4.1k
views
local blastp against NR database
blastp
NR
TIME
7.1 years ago by
Chirag Parsania
★ 2.0k
1
vote
2
replies
2.9k
views
How to find more than 'n %' overlapping ranges using GRanges package ?
R
genomicRanges
GRanges
7.3 years ago by
Chirag Parsania
★ 2.0k
3
votes
6
replies
1.8k
views
NR BLAST on AWS
blast
amazone
aws
cloud
updated 7.3 years ago by
Biostar
20 • written 7.3 years ago by
Chirag Parsania
★ 2.0k
1
vote
11
replies
2.1k
views
Significant difference in H3 CHiP data of two conditions (P-value for skewed distribution)
statistics
ChIP-Seq
p-value
h3
histone
7.3 years ago by
Chirag Parsania
★ 2.0k
1
vote
1
reply
3.1k
views
Cross correlation analysis in R
R
crosscorrelation
signalprocessing
updated 8.1 years ago by
Jean-Karim Heriche
27k • written 8.1 years ago by
Chirag Parsania
★ 2.0k
1
vote
5
replies
1.9k
views
Generate bed co-ordinates other then given input bed file
bed
bedtools
updated 18 months ago by
Ram
44k • written 8.3 years ago by
Chirag Parsania
★ 2.0k
0
votes
1
reply
4.3k
views
PASA: Error during sample run
blat
gmap
PASA
updated 2.4 years ago by
Ram
44k • written 8.6 years ago by
Chirag Parsania
★ 2.0k
0
votes
1
reply
1.8k
views
Why cufflink gives two transcripts/isoforms for one particular ORF ??
RNA-Seq
Assembly
cufflinks
updated 2.1 years ago by
Ram
44k • written 8.8 years ago by
Chirag Parsania
★ 2.0k
13
votes
8
replies
8.3k
views
How to find intron co-ordinates from the gff file?
intron
gff
bedtools
updated 2.1 years ago by
Ram
44k • written 8.9 years ago by
Chirag Parsania
★ 2.0k
11
votes
7
replies
11k
views
7 follow
Extract reads from bam/sam files using read id
fastq
bam
samtools
alignment
updated 18 months ago by
Ram
44k • written 8.9 years ago by
Chirag Parsania
★ 2.0k
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