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388
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Any tool that can give me a list of DNA/RNA aptamers against specific protein as the in vitro SELEX library to screen the sequences?
aptamer protein SELEX
8 weeks ago by J.F.Jiang ▴ 910
0
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1
reply
499
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tumor fraction estimation and fragment size plot using sWGS data
ctDNA NGS WGS
updated 5 months ago by 43k • written 17 months ago by ▴ 910
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0
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585
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Comment: Comment: BCR/TCR analysis using target capture sequencing data
10 months ago by J.F.Jiang ▴ 910
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2
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585
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BCR/TCR analysis using target capture sequencing data
capture ngs TCR BCR
10 months ago by J.F.Jiang ▴ 910
0
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1
reply
929
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Comment: Comment: combine/merge closet variants into one from mutect2
11 months ago by J.F.Jiang ▴ 910
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1
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929
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Comment: Comment: combine/merge closet variants into one from mutect2
11 months ago by J.F.Jiang ▴ 910
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5
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929
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combine/merge closet variants into one from mutect2
variants mutect2 merge gatk
updated 11 months ago by 100k • written 11 months ago by ▴ 910
0
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1
reply
699
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Comment: Comment: BCL2 fusions not detected in RNA level
11 months ago by J.F.Jiang ▴ 910
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4
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699
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BCL2 fusions not detected in RNA level
fusion RNA BCL2
updated 11 months ago by 82k • written 11 months ago by ▴ 910
0
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0
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409
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multiplex pcr PRIMER
sequence primer multiplex pcr
13 months ago by J.F.Jiang ▴ 910
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0
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322
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heterozygosity control from NGS data
heterozygosity NGS SNP
20 months ago by J.F.Jiang ▴ 910
0
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1
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889
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Comment: Comment: tumor fraction estimation for ctDNA panel sequecing data
2.1 years ago by J.F.Jiang ▴ 910
1
vote
3
replies
889
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tumor fraction estimation for ctDNA panel sequecing data
fraction NGS panel tumor ctDNA
updated 2.1 years ago by ▴ 550 • written 2.1 years ago by ▴ 910
0
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1
reply
683
views
hgvs annotation from VCF
VCF HGVS annotation
updated 2.2 years ago by 21k • written 2.2 years ago by ▴ 910
0
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0
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383
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any tool to plot the fragment profile for ctDNA samples?
fragment ctDNA
2.2 years ago by J.F.Jiang ▴ 910
16
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8
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14k
views
7 follow
How Can We Find The Info For 3'Utr And 5'Utr In Gencode Gtf File?
utr
updated 2.2 years ago by ▴ 10 • written 10.8 years ago by ▴ 910
3
votes
10
replies
8.5k
views
6 follow
GATK HaolotypeCaller takes too much time for variant calling
HaplotypeCaller GATK
updated 19 days ago by 43k • written 6.4 years ago by ▴ 910
0
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0
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812
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genomewide CNV analysis and plot from low pass WGS data
CNV CNVSEQ WGS
3.2 years ago by J.F.Jiang ▴ 910
0
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4
replies
986
views
public tools to distinguish germline variants from somatic ones in NGS data without matched normal
germline somatic NGS tumor
updated 3.3 years ago by 20 • written 3.4 years ago by ▴ 910
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0
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986
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Comment: C: public tools to distinguish germline variants from somatic ones in NGS data with
3.4 years ago by J.F.Jiang ▴ 910
0
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1
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986
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Comment: C: public tools to distinguish germline variants from somatic ones in NGS data with
3.4 years ago by J.F.Jiang ▴ 910
0
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0
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761
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best tool to evaluate the CNV status of germline samples using 1x WGS
CNV WGS
3.5 years ago by J.F.Jiang ▴ 910
0
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0
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650
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Max mutation allele frequency against tumor purity
tumor AF PURITY
3.7 years ago by J.F.Jiang ▴ 910
0
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1
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959
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Comment: C: HPV EBV typing from cancer genome data
3.7 years ago by J.F.Jiang ▴ 910
2
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4
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959
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HPV EBV typing from cancer genome data
HPV EBV NGS
updated 3.7 years ago by ★ 2.9k • written 3.7 years ago by ▴ 910
32
votes
12
replies
23k
views
9 follow
Bwa Mem Method For Mapping, With Or Without Trimming Reads?
bwa
updated 3.8 years ago by 20 • written 10.3 years ago by ▴ 910
0
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1
reply
1.0k
views
LOH segment inferring from WES data for germline sample
LOH WES
3.9 years ago by J.F.Jiang ▴ 910
1
vote
5
replies
2.1k
views
fusion detection for DNA Sequencing data
fusion NGS DNA
updated 4.1 years ago by ★ 2.9k • written 4.1 years ago by ▴ 910
0
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1
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2.1k
views
Comment: C: fusion detection for DNA Sequencing data
4.1 years ago by J.F.Jiang ▴ 910
1
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0
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2.1k
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Comment: C: fusion detection for DNA Sequencing data
4.1 years ago by J.F.Jiang ▴ 910
1
vote
0
replies
1.5k
views
Comment: C: CNV analysis for tumor panel
4.1 years ago by J.F.Jiang ▴ 910
1
vote
1
reply
689
views
looking somatic variants interpreter, AS CKB database
ckb somatic interpreter
updated 4.1 years ago by 87k • written 4.2 years ago by ▴ 910
2
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5
replies
2.7k
views
remove primer sequences from BAM file
bam primer
updated 4.3 years ago by • 0 • written 5.7 years ago by ▴ 910
0
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2
replies
981
views
convenient tools to collect target mapping metrics
target mapping
updated 4.3 years ago by 20 • written 4.4 years ago by ▴ 910
0
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0
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981
views
Comment: C: convenient tools to collect target mapping metrics
4.4 years ago by J.F.Jiang ▴ 910
0
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0
replies
1.0k
views
calculate MSI STATUS using predefined MSI loci
MSI msisensor
4.5 years ago by J.F.Jiang ▴ 910
0
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1
reply
23k
views
Comment: C: Bwa Mem Method For Mapping, With Or Without Trimming Reads?
updated 4.5 years ago by 43k • written 10.3 years ago by ▴ 910
2
votes
5
replies
1.5k
views
CNV analysis for tumor panel
CNV
updated 4.7 years ago by ★ 2.8k • written 4.8 years ago by ▴ 910
1
vote
5
replies
2.9k
views
amplicon based germline CNV caller
amplicon germline CNV
updated 4.7 years ago by ▴ 90 • written 6.7 years ago by ▴ 910
0
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1
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1.5k
views
Comment: A: CNV analysis for tumor panel
4.8 years ago by J.F.Jiang ▴ 910
0
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2
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1.4k
views
pairwise calculation of relationship based on selected SNPs with MAF>0.3
relationship SNP
updated 5.4 years ago by 20 • written 6.4 years ago by ▴ 910
3
votes
3
replies
2.2k
views
Simulate genotypes for SNPs, considering MAF and LD structure
genotype simulation SNP MAF LD
updated 5.4 years ago by 11k • written 6.3 years ago by ▴ 910
0
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0
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2.6k
views
Comment: C: Free Genetic Genealogy Software
5.7 years ago by J.F.Jiang ▴ 910
0
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0
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2.7k
views
Comment: C: remove primer sequences from BAM file
5.7 years ago by J.F.Jiang ▴ 910
0
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1
reply
2.7k
views
Comment: C: remove primer sequences from BAM file
updated 5.7 years ago by 47k • written 5.7 years ago by ▴ 910
0
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2
replies
1.8k
views
autosomal ancestry inference
GWAS ancestry
updated 5.7 years ago by 87k • written 5.7 years ago by ▴ 910
0
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1
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1.7k
views
how to genotype given SNP alleles from NGS data using freebayes
genotype NGS freebayes
updated 6.4 years ago by • 0 • written 6.6 years ago by ▴ 910
0
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0
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1.7k
views
Comment: C: extract region bam
6.4 years ago by J.F.Jiang ▴ 910
0
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2
replies
1.7k
views
extract region bam
bam region
updated 6.4 years ago by 35k • written 6.4 years ago by ▴ 910
0
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0
replies
1.4k
views
Comment: C: pairwise calculation of relationship based on selected SNPs with MAF>0.3
6.4 years ago by J.F.Jiang ▴ 910
273 results • Page 1 of 6
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