Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
Showing : all
0
votes
1
reply
298
views
Comment: Comment: tumor fraction estimation for ctDNA panel sequecing data
4 months ago by J.F.Jiang ▴ 880
1
vote
3
replies
298
views
tumor fraction estimation for ctDNA panel sequecing data
fraction NGS panel tumor ctDNA
updated 4 months ago by ▴ 540 • written 4 months ago by ▴ 880
0
votes
1
reply
247
views
hgvs annotation from VCF
VCF HGVS annotation
updated 5 months ago by 21k • written 5 months ago by ▴ 880
0
votes
0
replies
162
views
any tool to plot the fragment profile for ctDNA samples?
fragment ctDNA
5 months ago by J.F.Jiang ▴ 880
12
votes
8
replies
11k
views
7 follow
How Can We Find The Info For 3'Utr And 5'Utr In Gencode Gtf File?
utr
updated 6 months ago by ▴ 10 • written 9.0 years ago by ▴ 880
3
votes
10
replies
5.9k
views
6 follow
GATK HaolotypeCaller takes too much time for variant calling
GATK HaplotypeCaller long
updated 14 months ago by 147k • written 4.7 years ago by ▴ 880
0
votes
0
replies
512
views
genomewide CNV analysis and plot from low pass WGS data
CNV CNVSEQ WGS
18 months ago by J.F.Jiang ▴ 880
0
votes
4
replies
643
views
public tools to distinguish germline variants from somatic ones in NGS data without matched normal
germline somatic NGS tumor
updated 19 months ago by 20 • written 20 months ago by ▴ 880
0
votes
0
replies
643
views
Comment: C: public tools to distinguish germline variants from somatic ones in NGS data with
20 months ago by J.F.Jiang ▴ 880
0
votes
1
reply
643
views
Comment: C: public tools to distinguish germline variants from somatic ones in NGS data with
20 months ago by J.F.Jiang ▴ 880
0
votes
0
replies
473
views
best tool to evaluate the CNV status of germline samples using 1x WGS
CNV WGS
21 months ago by J.F.Jiang ▴ 880
0
votes
0
replies
422
views
Max mutation allele frequency against tumor purity
tumor AF PURITY
23 months ago by J.F.Jiang ▴ 880
0
votes
1
reply
574
views
Comment: C: HPV EBV typing from cancer genome data
24 months ago by J.F.Jiang ▴ 880
0
votes
4
replies
574
views
HPV EBV typing from cancer genome data
HPV EBV NGS
updated 24 months ago by ★ 2.6k • written 24 months ago by ▴ 880
32
votes
12
replies
20k
views
9 follow
Bwa Mem Method For Mapping, With Or Without Trimming Reads?
bwa
updated 2.1 years ago by 20 • written 8.6 years ago by ▴ 880
0
votes
1
reply
699
views
LOH segment inferring from WES data for germline sample
LOH WES
2.2 years ago by J.F.Jiang ▴ 880
1
vote
5
replies
1.2k
views
fusion detection for DNA Sequencing data
fusion NGS DNA
updated 2.3 years ago by ★ 2.6k • written 2.3 years ago by ▴ 880
0
votes
1
reply
1.2k
views
Comment: C: fusion detection for DNA Sequencing data
2.3 years ago by J.F.Jiang ▴ 880
1
vote
0
replies
1.2k
views
Comment: C: fusion detection for DNA Sequencing data
2.3 years ago by J.F.Jiang ▴ 880
1
vote
0
replies
1.0k
views
Comment: C: CNV analysis for tumor panel
2.3 years ago by J.F.Jiang ▴ 880
1
vote
1
reply
445
views
looking somatic variants interpreter, AS CKB database
ckb somatic interpreter
updated 2.4 years ago by 82k • written 2.5 years ago by ▴ 880
2
votes
5
replies
1.9k
views
remove primer sequences from BAM file
bam primer
updated 2.6 years ago by • 0 • written 4.0 years ago by ▴ 880
0
votes
2
replies
616
views
convenient tools to collect target mapping metrics
target mapping
updated 2.6 years ago by 20 • written 2.7 years ago by ▴ 880
0
votes
0
replies
616
views
Comment: C: convenient tools to collect target mapping metrics
2.7 years ago by J.F.Jiang ▴ 880
0
votes
0
replies
746
views
calculate MSI STATUS using predefined MSI loci
MSI msisensor
2.8 years ago by J.F.Jiang ▴ 880
0
votes
1
reply
20k
views
Comment: C: Bwa Mem Method For Mapping, With Or Without Trimming Reads?
updated 2.8 years ago by 36k • written 8.6 years ago by ▴ 880
2
votes
5
replies
1.0k
views
CNV analysis for tumor panel
CNV
updated 3.0 years ago by ★ 2.7k • written 3.1 years ago by ▴ 880
1
vote
5
replies
2.2k
views
amplicon based germline CNV caller
amplicon germline CNV
updated 3.0 years ago by ▴ 70 • written 5.0 years ago by ▴ 880
0
votes
1
reply
1.0k
views
Comment: A: CNV analysis for tumor panel
3.0 years ago by J.F.Jiang ▴ 880
0
votes
2
replies
1.1k
views
pairwise calculation of relationship based on selected SNPs with MAF>0.3
relationship SNP
updated 3.6 years ago by 20 • written 4.7 years ago by ▴ 880
3
votes
3
replies
1.8k
views
Simulate genotypes for SNPs, considering MAF and LD structure
genotype simulation SNP MAF LD
updated 3.7 years ago by 11k • written 4.6 years ago by ▴ 880
0
votes
0
replies
2.1k
views
Comment: C: Free Genetic Genealogy Software
4.0 years ago by J.F.Jiang ▴ 880
0
votes
0
replies
1.9k
views
Comment: C: remove primer sequences from BAM file
4.0 years ago by J.F.Jiang ▴ 880
0
votes
1
reply
1.9k
views
Comment: C: remove primer sequences from BAM file
updated 4.0 years ago by 46k • written 4.0 years ago by ▴ 880
0
votes
2
replies
1.5k
views
autosomal ancestry inference
GWAS ancestry
updated 4.0 years ago by 82k • written 4.0 years ago by ▴ 880
0
votes
1
reply
1.4k
views
how to genotype given SNP alleles from NGS data using freebayes
genotype NGS freebayes
updated 4.6 years ago by • 0 • written 4.9 years ago by ▴ 880
0
votes
0
replies
1.3k
views
Comment: C: extract region bam
4.7 years ago by J.F.Jiang ▴ 880
0
votes
2
replies
1.3k
views
extract region bam
bam region
updated 4.7 years ago by 34k • written 4.7 years ago by ▴ 880
0
votes
0
replies
1.1k
views
Comment: C: pairwise calculation of relationship based on selected SNPs with MAF>0.3
4.7 years ago by J.F.Jiang ▴ 880
0
votes
0
replies
5.9k
views
Comment: C: GATK HaolotypeCaller takes too much time for variant calling
4.7 years ago by J.F.Jiang ▴ 880
0
votes
1
reply
1.1k
views
Comment: C: Fasted method to genotype given SNPs from NGS data
4.7 years ago by J.F.Jiang ▴ 880
0
votes
6
replies
1.1k
views
Fasted method to genotype given SNPs from NGS data
genotype SNP NGS
4.7 years ago by J.F.Jiang ▴ 880
0
votes
1
reply
5.9k
views
Comment: C: GATK HaolotypeCaller takes too much time for variant calling
4.7 years ago by J.F.Jiang ▴ 880
0
votes
0
replies
1.0k
views
get CDS cordinates for genes, excluding UTR
CDS gene
4.7 years ago by J.F.Jiang ▴ 880
4
votes
1
reply
3.2k
views
Genetic rsisk score, polygenic risk score
GRS PRS
updated 4.8 years ago by ▴ 20 • written 6.4 years ago by ▴ 880
0
votes
0
replies
1.1k
views
Comment: C: allelic unbalance for multiplex PCR based amplicon data
4.9 years ago by J.F.Jiang ▴ 880
0
votes
0
replies
1.1k
views
Comment: C: allelic unbalance for multiplex PCR based amplicon data
4.9 years ago by J.F.Jiang ▴ 880
0
votes
4
replies
1.1k
views
allelic unbalance for multiplex PCR based amplicon data
allelic multiplex PCR amplicon
updated 4.9 years ago by 82k • written 4.9 years ago by ▴ 880
0
votes
0
replies
2.2k
views
Comment: C: amplicon based germline CNV caller
4.9 years ago by J.F.Jiang ▴ 880
0
votes
0
replies
2.2k
views
Comment: C: amplicon based germline CNV caller
5.0 years ago by J.F.Jiang ▴ 880
262 results • Page 1 of 6
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6