User: Pratham

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Pratham0
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Posts by Pratham

<prev • 6 results • page 1 of 1 • next >
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Can I query a BLASTN in Shell using a given input sequence and not a FASTA file?
... Hello, I want to pass an input sequence to BLASTN command and not a FASTA file. I am not able to execute a shell command in this manner - blastn -outfmt 5 -query '>Name\nATGGCAGCAGTGGGTGCACCTCGCGAAGTAGCTGGAAACGAGAACAGCCTCGAGATCGATAGTCTTGCTC\nGCTTTGCTGTTGATGAACACAACAAGAAACAGGTTTCTTTCTCTCTCTTGC ...
blast written 3.5 years ago by Pratham0 • updated 3.5 years ago by Pierre Lindenbaum116k
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Comment: C: Implementing Blast tool for local database on a website using WAMP and Windows
... Thanks for your help. I was confused about the database structure. Now that I have installed blast-2.2.31+ in my system, I am able to figure out that the BLAST databases are different from relational ones. I would like to implement a similar BLAST functionality on a website. Where can I get acces ...
written 3.5 years ago by Pratham0
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Comment: C: Implementing Blast tool for local database on a website using WAMP and Windows
... Ok. So is it like for every FASTA file, a local binary file is generated. I can get a corresponding FASTA file for the data stored in my MySQL database table. Using this FASTA file I can generate a local binary file. Will Windows WAMP server be a problem in that case? ...
written 3.6 years ago by Pratham0
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Comment: C: Implementing Blast tool for local database on a website using WAMP and Windows
... I am using a tabular structure database in MySQL. The database table has the required ATGC sequence column. Does BLAST tool use some different database structure model? ...
written 3.6 years ago by Pratham0
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Implementing Blast tool for local database on a website using WAMP and Windows
... Hello, I am a software engineer. I am working on an assignment wherein I have to implement a BLAST tool on a website. The BLAST tool should work with the local databases I have created in the MySQL server. I am using a WAMP server on Windows for creating and hosting the website using Dreamweaver. ...
wamp windows mysql blast website written 3.6 years ago by Pratham0
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Comment: C: Embedding Blast Tool In A Website
... Hello Paul, Considering your recent post on this topic, I am too looking for a similar kind of a functionality. Were you able to embed BLAST? Regards, Pratham ...
written 3.6 years ago by Pratham0

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