User: doommonk

gravatar for doommonk
doommonk10
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United Kingdom
Last seen:
5 years, 5 months ago
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5 years, 6 months ago
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d*******@hotmail.co.uk

Posts by doommonk

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Answer: A: Recoding columns independently of one another in R
... Original table Column 1 Column 2 0/0 0/0 0/2 1/1 1/2 0/1 0/0 0/2 Recoded table Column 1 Column 2 1 1 3 4 5 2 1 3 So in the example of 2 alternatives  0/0 = 1 0/1 ...
written 5.5 years ago by doommonk10
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Recoding columns independently of one another in R
... Hi,   I'm working with a data frame of genotypes produced from multiallelic indels, an example  would be Column 1 Column 2 0/3 0/0 0/2 0/1 1/1 0/2 0/0 0/2 The possible genotypes depends on how many alternative alleles there are fo ...
R recoding written 5.5 years ago by doommonk10 • updated 5.5 years ago by Antonio R. Franco4.5k
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Comment: A: Multiple regression for indel data in plink
... I know the covar file is meant to be formated like: FID    IID    COV  But should the cov be the different types of alleles or genotypes ...
written 5.5 years ago by doommonk10
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Multiple regression for indel data in plink
... Hi, I am trying to conduct a multiple regression on indel data. In my vcf file I have some variants that are biallelic and some which are multiallelic. I have already tested the biallelic data so only need to run the multiallelic. I was given this line of code as a guide "plink --bfile mydata --li ...
regression multiple regression plink written 5.5 years ago by doommonk10

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