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9.9k
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Comment: C: Mark duplicates PICARD error: Unable to access jarfile 'MarkDuplicates.jar' with
6.7 years ago by salamandra ▴ 550
0
votes
0
replies
9.9k
views
Comment: C: Mark duplicates PICARD error: Unable to access jarfile 'MarkDuplicates.jar' with
6.7 years ago by salamandra ▴ 550
0
votes
1
reply
9.9k
views
Comment: C: Mark duplicates PICARD error: Unable to access jarfile 'MarkDuplicates.jar' with
6.7 years ago by salamandra ▴ 550
0
votes
0
replies
9.9k
views
Comment: C: Mark duplicates PICARD error: Unable to access jarfile 'MarkDuplicates.jar' with
6.7 years ago by salamandra ▴ 550
0
votes
1
reply
9.9k
views
Comment: C: Mark duplicates PICARD error: Unable to access jarfile 'MarkDuplicates.jar' with
6.7 years ago by salamandra ▴ 550
3
votes
13
replies
9.9k
views
Mark duplicates PICARD error: Unable to access jarfile 'MarkDuplicates.jar' with commandline/with R dupRadar package
markduplicates Picard RNA-Seq
6.7 years ago by salamandra ▴ 550
2
votes
1
reply
942
views
Seqmonk has two CRCh38 human genome versions, which one is the major release?
assembly RNA-seq genome ensembl
6.7 years ago by salamandra ▴ 550
0
votes
1
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6.7k
views
Comment: C: STAR ERROR: could not open genomeParameters.txt / How to increase RAM?
6.7 years ago by salamandra ▴ 550
0
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2
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6.7k
views
Comment: C: STAR ERROR: could not open genomeParameters.txt / How to increase RAM?
6.7 years ago by salamandra ▴ 550
4
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6
replies
6.7k
views
STAR ERROR: could not open genomeParameters.txt / How to increase RAM?
STAR RNA-Seq
6.7 years ago by salamandra ▴ 550
0
votes
0
replies
6.6k
views
Comment: C: STAR alignment error: Genome_genomeGenerate.cpp:208:genomeGenerate: exiting beca
6.7 years ago by salamandra ▴ 550
0
votes
0
replies
1.5k
views
Comment: C: Which gene annotation file in UCSC is equivalent to the gene annotation file tha
6.7 years ago by salamandra ▴ 550
2
votes
4
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1.5k
views
Which gene annotation file in UCSC is equivalent to the gene annotation file that is NOT 'abinitio' or 'chromossome' in ensembl?
RNA-Seq anotation file
6.7 years ago by salamandra ▴ 550
0
votes
1
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1.5k
views
Comment: A: Which gene annotation file in UCSC is equivalent to the gene annotation file tha
6.7 years ago by salamandra ▴ 550
3
votes
0
replies
19k
views
Comment: C: Which truseq trimmomatic adapters file to use when removing truseq adapters?
6.8 years ago by salamandra ▴ 550
0
votes
1
reply
19k
views
Comment: C: Which truseq trimmomatic adapters file to use when removing truseq adapters?
6.8 years ago by salamandra ▴ 550
0
votes
1
reply
19k
views
Comment: C: Which truseq trimmomatic adapters file to use when removing truseq adapters?
6.8 years ago by salamandra ▴ 550
0
votes
1
reply
19k
views
Comment: C: Which truseq trimmomatic adapters file to use when removing truseq adapters?
6.8 years ago by salamandra ▴ 550
0
votes
1
reply
19k
views
Comment: C: Which truseq trimmomatic adapters file to use when removing truseq adapters?
6.8 years ago by salamandra ▴ 550
0
votes
1
reply
19k
views
Comment: C: Which truseq trimmomatic adapters file to use when removing truseq adapters?
6.8 years ago by salamandra ▴ 550
16
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14
replies
19k
views
Which truseq trimmomatic adapters file to use when removing truseq adapters?
adapters trimmomatic RNA-seq
6.8 years ago by salamandra ▴ 550
10
votes
11
replies
6.1k
views
Does adapter removal (with trimmomatic) also remove barcodes?
barcodes adapters RNA-Seq
updated 6.8 years ago by 14k • written 6.8 years ago by ▴ 550
0
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1
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6.1k
views
Comment: C: Does adapter removal (with trimmomatic) also remove barcodes?
6.8 years ago by salamandra ▴ 550
0
votes
1
reply
6.1k
views
Comment: C: Does adapter removal (with trimmomatic) also remove barcodes?
6.8 years ago by salamandra ▴ 550
0
votes
1
reply
6.1k
views
Comment: C: Does adapter removal (with trimmomatic) also remove barcodes?
6.8 years ago by salamandra ▴ 550
0
votes
1
reply
3.6k
views
Comment: C: mRNA-seq quality report (fastQC): Does it mean samples have adapters and should
6.8 years ago by salamandra ▴ 550
1
vote
3
replies
2.6k
views
Error: could not find function "exptData"
R
updated 6.8 years ago by • 0 • written 8.0 years ago by ▴ 550
0
votes
0
replies
16k
views
Comment: C: BioMart: connection fails
6.9 years ago by salamandra ▴ 550
0
votes
1
reply
16k
views
Comment: C: BioMart: connection fails
6.9 years ago by salamandra ▴ 550
3
votes
6
replies
3.7k
views
Isn't fastq file header suppose to have barcode sequence?
ChIP-Seq Quality control
updated 7.0 years ago by 20 • written 7.1 years ago by ▴ 550
20
votes
11
replies
10k
views
6 follow
If we use MACS2 do we need to remove duplicate sequences with samtools rmdup ?
ChIP-Seq Duplicates MACS2
updated 7.0 years ago by 20 • written 7.1 years ago by ▴ 550
0
votes
0
replies
1.4k
views
Beedtools intersect: more peaks intersected than intersected portions of those peaks?
beedtools intersect sequencing RNA-seq ChIP-seq
7.0 years ago by salamandra ▴ 550
0
votes
1
reply
5.8k
views
Comment: C: Why command gives the error: extra operand 23243?
7.0 years ago by salamandra ▴ 550
0
votes
1
reply
5.8k
views
Comment: C: Why command gives the error: extra operand 23243?
7.0 years ago by salamandra ▴ 550
3
votes
7
replies
5.8k
views
Why command gives the error: extra operand 23243?
commandline Bash comm
7.0 years ago by salamandra ▴ 550
0
votes
1
reply
5.8k
views
Comment: C: Why command gives the error: extra operand 23243?
7.0 years ago by salamandra ▴ 550
0
votes
1
reply
4.7k
views
Comment: C: Deeptools - ComputeMatrix: Why does 'referencePoint center' gives the same heatm
7.1 years ago by salamandra ▴ 550
1
vote
4
replies
4.7k
views
Deeptools - ComputeMatrix: Why does 'referencePoint center' gives the same heatmap as 'referencePoint TSS'
ChIP-Seq sequencing deeptools
7.1 years ago by salamandra ▴ 550
0
votes
0
replies
2.9k
views
ChIP-seq heatmap: Which MACS2 output file should we give as input into deeptools computeMatrix?
deeptools computeMatrix RNA-Seq ChIP-Seq MACS2
7.1 years ago by salamandra ▴ 550
0
votes
0
replies
3.4k
views
Comment: C: Files to compare ChIP vs Input on genome browser: after alignment or peak callin
7.1 years ago by salamandra ▴ 550
0
votes
2
replies
3.4k
views
Comment: C: Files to compare ChIP vs Input on genome browser: after alignment or peak callin
7.1 years ago by salamandra ▴ 550
0
votes
2
replies
2.1k
views
MACS2: What is in 4th column of treat_pvalue.bdg/treat_qvalue.bdg files?
ChIP-Seq MACS2
3.4 years ago by salamandra ▴ 550
0
votes
2
replies
3.4k
views
Comment: C: Files to compare ChIP vs Input on genome browser: after alignment or peak callin
7.1 years ago by salamandra ▴ 550
0
votes
1
reply
3.4k
views
Comment: C: Files to compare ChIP vs Input on genome browser: after alignment or peak callin
7.1 years ago by salamandra ▴ 550
5
votes
14
replies
3.4k
views
Files to compare ChIP vs Input on genome browser: after alignment or peak calling?
ChIP-seq genome browser MACS2
updated 7.1 years ago by 9.0k • written 7.1 years ago by ▴ 550
0
votes
1
reply
3.4k
views
Comment: C: Files to compare ChIP vs Input on genome browser: after alignment or peak callin
7.1 years ago by salamandra ▴ 550
0
votes
1
reply
3.4k
views
Comment: C: Files to compare ChIP vs Input on genome browser: after alignment or peak callin
7.1 years ago by salamandra ▴ 550
5
votes
5
replies
1.7k
views
Wig file interpreted as bed file in genome browser
Genome Browser
updated 7.1 years ago by ▴ 580 • written 7.1 years ago by ▴ 550
0
votes
1
reply
1.7k
views
Comment: C: Wig file interpreted as bed file in genome browser
7.1 years ago by salamandra ▴ 550
0
votes
1
reply
1.7k
views
Comment: C: Wig file interpreted as bed file in genome browser
7.1 years ago by salamandra ▴ 550
211 results • Page 3 of 5
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