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13
votes
25
replies
4.3k
views
7 follow
VEP output has no gene names
alignment
sequencing
vep
updated 10 months ago by
barslmn
★ 2.1k • written 5.7 years ago by
Gene_MMP8
▴ 240
0
votes
0
replies
1.4k
views
Comment:
Comment: Bad quality fastq files for analysis
13 months ago by
Gene_MMP8
▴ 240
2
votes
6
replies
1.4k
views
Bad quality fastq files for analysis
quality
bad
DNA-seq
fastq
alignment
13 months ago by
Gene_MMP8
▴ 240
0
votes
0
replies
1.4k
views
Comment:
Comment: Bad quality fastq files for analysis
13 months ago by
Gene_MMP8
▴ 240
2
votes
1
reply
555
views
Renormalize after row/column deletion from TPM data in RNA-seq
normalization
TPM
RNA-seq
updated 14 months ago by
ATpoint
82k • written 14 months ago by
Gene_MMP8
▴ 240
0
votes
1
reply
634
views
Comment:
Comment: Unable to validate biomarkers obtained from single-cell RNA-seq data
14 months ago by
Gene_MMP8
▴ 240
0
votes
3
replies
634
views
Unable to validate biomarkers obtained from single-cell RNA-seq data
biomarkers
single-cell
Seurat
updated 14 months ago by
ATpoint
82k • written 14 months ago by
Gene_MMP8
▴ 240
0
votes
1
reply
2.0k
views
Comment:
Comment: Sequence identity between two protein sequences
19 months ago by
Gene_MMP8
▴ 240
4
votes
3
replies
2.0k
views
Sequence identity between two protein sequences
Identity
Protein
updated 19 months ago by
Andrzej Zielezinski
11k • written 19 months ago by
Gene_MMP8
▴ 240
11
votes
10
replies
7.4k
views
Samtools flagstat results
next-gen
updated 5 months ago by
LuciaNhu
• 0 • written 6.7 years ago by
Gene_MMP8
▴ 240
1
vote
0
replies
453
views
Gene ontology enrichment vs. REACTOME pathway analysis
GO
REACTOME
22 months ago by
Gene_MMP8
▴ 240
0
votes
1
reply
939
views
scRNA-seq analysis using TPM counts
RNA-seq
TPM
singlecell
Seurat
updated 2.1 years ago by
Soheil
▴ 110 • written 2.1 years ago by
Gene_MMP8
▴ 240
0
votes
0
replies
577
views
Confusion regarding manual inclusion of read group information from fastq files
readgroup
sequencing
bwa
fatsq
updated 2.4 years ago by
Pierre Lindenbaum
161k • written 2.4 years ago by
Gene_MMP8
▴ 240
0
votes
0
replies
514
views
Separate vcf file creation for matched tumor-normal samples
vcf
2.6 years ago by
Gene_MMP8
▴ 240
1
vote
1
reply
664
views
Extract batch variable from GEO dataset
GEO
batch_analysis
microarray
updated 2.7 years ago by
ATpoint
82k • written 2.7 years ago by
Gene_MMP8
▴ 240
0
votes
0
replies
455
views
Extract peptide information from proteomics data
proteomics
peptide
2.7 years ago by
Gene_MMP8
▴ 240
0
votes
0
replies
460
views
Power calculation for microarray data
statistical_power
microarray
2.7 years ago by
Gene_MMP8
▴ 240
0
votes
2
replies
4.3k
views
Comment:
Comment: Manual annotation of cell types in single cell RNA-seq
2.7 years ago by
Gene_MMP8
▴ 240
3
votes
5
replies
4.3k
views
Manual annotation of cell types in single cell RNA-seq
Seurat
single_cell
annotation
updated 2.7 years ago by
Friederike
8.9k • written 2.7 years ago by
Gene_MMP8
▴ 240
2
votes
1
reply
968
views
Why am I getting microRNA genes from a 10X genomics dataset?
RNA-seq
microRNA
2.8 years ago by
Gene_MMP8
▴ 240
0
votes
0
replies
3.3k
views
Comment:
Comment: remove Batch Effect between several **RNA-seq** studies (no replication)
2.9 years ago by
Gene_MMP8
▴ 240
0
votes
1
reply
870
views
Comment:
Comment: Normalizing across multiple RNA-seq datasets
2.9 years ago by
Gene_MMP8
▴ 240
1
vote
3
replies
870
views
Normalizing across multiple RNA-seq datasets
RNASeq
normalization
updated 2.9 years ago by
i.sudbery
19k • written 2.9 years ago by
Gene_MMP8
▴ 240
0
votes
1
reply
1.0k
views
Comment:
C: Pathway analysis of a list of possible cancer driver genes
3.3 years ago by
Gene_MMP8
▴ 240
8
votes
4
replies
1.0k
views
Pathway analysis of a list of possible cancer driver genes
pathway analysis
cancer
driver genes
updated 3.3 years ago by
Kevin Blighe
87k • written 3.3 years ago by
Gene_MMP8
▴ 240
3
votes
2
replies
4.8k
views
Include gene ontology codes in the plots generated using the enrochplot package
functional enrichment analysis
gsea
enrichplot
updated 3.3 years ago by
ATpoint
82k • written 3.3 years ago by
Gene_MMP8
▴ 240
0
votes
1
reply
1.0k
views
Types of base substitutions
genome
SNP
3.4 years ago by
Gene_MMP8
▴ 240
1
vote
2
replies
2.9k
views
How to run bedtools from inside a python program
bedtools
python
commandline
updated 3.5 years ago by
Joe
21k • written 3.5 years ago by
Gene_MMP8
▴ 240
1
vote
0
replies
2.5k
views
Comment:
C: Batch effect removal with the help of sva
3.5 years ago by
Gene_MMP8
▴ 240
0
votes
1
reply
2.5k
views
Comment:
C: Batch effect removal with the help of sva
3.5 years ago by
Gene_MMP8
▴ 240
0
votes
1
reply
2.5k
views
Comment:
C: Batch effect removal with the help of sva
3.5 years ago by
Gene_MMP8
▴ 240
8
votes
6
replies
2.5k
views
Batch effect removal with the help of sva
SVA
batch-effect
gene-expression
updated 16 days ago by
Ram
43k • written 3.5 years ago by
Gene_MMP8
▴ 240
0
votes
0
replies
705
views
Feature extraction pipeline for CHASMplus
CHASMplus
3.6 years ago by
Gene_MMP8
▴ 240
0
votes
1
reply
1.1k
views
Comment:
C: Convert variant coordinates from one genome build to the other
3.6 years ago by
Gene_MMP8
▴ 240
2
votes
3
replies
1.1k
views
Convert variant coordinates from one genome build to the other
sequence
variant
genome_build
3.6 years ago by
Gene_MMP8
▴ 240
0
votes
1
reply
771
views
Comment:
C: Conserved regions around mutations
3.7 years ago by
Gene_MMP8
▴ 240
1
vote
3
replies
771
views
Conserved regions around mutations
next-gen
sequencing
3.7 years ago by
Gene_MMP8
▴ 240
3
votes
1
reply
1.3k
views
Effect of sample size on log fold change in gene expression analysis
RNA-Seq
R
updated 3.9 years ago by
dsull
★ 5.8k • written 3.9 years ago by
Gene_MMP8
▴ 240
1
vote
1
reply
600
views
Amino acid substitution to nucleotide substitution conversion
R
sequencing
4.0 years ago by
Gene_MMP8
▴ 240
1
vote
1
reply
677
views
Similarity between DNA strings of two different classes
sequencing
similarity
4.0 years ago by
Gene_MMP8
▴ 240
1
vote
2
replies
755
views
scRNA data for human muscle cells
RNA-Seq
scRNA
machinelearning
4.1 years ago by
Gene_MMP8
▴ 240
0
votes
1
reply
1.3k
views
Comment:
C: How to download passenger mutations for cancer
4.1 years ago by
Gene_MMP8
▴ 240
0
votes
1
reply
1.3k
views
Comment:
C: How to download passenger mutations for cancer
4.1 years ago by
Gene_MMP8
▴ 240
0
votes
1
reply
1.3k
views
Comment:
C: How to download passenger mutations for cancer
4.1 years ago by
Gene_MMP8
▴ 240
6
votes
9
replies
1.3k
views
How to download passenger mutations for cancer
passenger mutations
driver mutations
cancer
updated 4.1 years ago by
Collin
▴ 1000 • written 4.1 years ago by
Gene_MMP8
▴ 240
0
votes
0
replies
764
views
Unable to understand the input to the tablemaker tool
RNA-Seq
software error
4.2 years ago by
Gene_MMP8
▴ 240
0
votes
0
replies
557
views
Common bioinformatics tools required to analyze the mutational distribution in mice genomes
genome
next-gen
4.4 years ago by
Gene_MMP8
▴ 240
3
votes
5
replies
1.2k
views
Estimate gene expression data
gene
updated 4.4 years ago by
Biostar
20 • written 5.1 years ago by
Gene_MMP8
▴ 240
0
votes
2
replies
16k
views
Answer:
A: Machine Learning For Cancer Classification - Part 3 - Predicting With A Random F
updated 4.4 years ago by
Ram
43k • written 8.8 years ago by
Gene_MMP8
▴ 240
0
votes
0
replies
876
views
Comment:
C: Mutation calling for pediatric cancer data
4.4 years ago by
Gene_MMP8
▴ 240
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