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13
votes
25
replies
4.3k
views
7 follow
VEP output has no gene names
alignment sequencing vep
updated 10 months ago by ★ 2.1k • written 5.7 years ago by ▴ 240
2
votes
6
replies
1.4k
views
Bad quality fastq files for analysis
quality bad DNA-seq fastq alignment
13 months ago by Gene_MMP8 ▴ 240
2
votes
1
reply
555
views
Renormalize after row/column deletion from TPM data in RNA-seq
normalization TPM RNA-seq
updated 14 months ago by 82k • written 14 months ago by ▴ 240
0
votes
3
replies
633
views
Unable to validate biomarkers obtained from single-cell RNA-seq data
biomarkers single-cell Seurat
updated 14 months ago by 82k • written 14 months ago by ▴ 240
4
votes
3
replies
2.0k
views
Sequence identity between two protein sequences
Identity Protein
updated 19 months ago by 11k • written 19 months ago by ▴ 240
11
votes
10
replies
7.4k
views
Samtools flagstat results
next-gen
updated 5 months ago by • 0 • written 6.7 years ago by ▴ 240
1
vote
0
replies
453
views
Gene ontology enrichment vs. REACTOME pathway analysis
GO REACTOME
22 months ago by Gene_MMP8 ▴ 240
0
votes
1
reply
939
views
scRNA-seq analysis using TPM counts
RNA-seq TPM singlecell Seurat
updated 2.1 years ago by ▴ 110 • written 2.1 years ago by ▴ 240
0
votes
0
replies
577
views
Confusion regarding manual inclusion of read group information from fastq files
readgroup sequencing bwa fatsq
updated 2.4 years ago by 161k • written 2.4 years ago by ▴ 240
0
votes
0
replies
513
views
Separate vcf file creation for matched tumor-normal samples
vcf
2.6 years ago by Gene_MMP8 ▴ 240
1
vote
1
reply
664
views
Extract batch variable from GEO dataset
GEO batch_analysis microarray
updated 2.7 years ago by 82k • written 2.7 years ago by ▴ 240
0
votes
0
replies
454
views
Extract peptide information from proteomics data
proteomics peptide
2.7 years ago by Gene_MMP8 ▴ 240
0
votes
0
replies
460
views
Power calculation for microarray data
statistical_power microarray
2.7 years ago by Gene_MMP8 ▴ 240
3
votes
5
replies
4.3k
views
Manual annotation of cell types in single cell RNA-seq
Seurat single_cell annotation
updated 2.7 years ago by 8.9k • written 2.7 years ago by ▴ 240
2
votes
1
reply
968
views
Why am I getting microRNA genes from a 10X genomics dataset?
RNA-seq microRNA
2.8 years ago by Gene_MMP8 ▴ 240
1
vote
3
replies
869
views
Normalizing across multiple RNA-seq datasets
RNASeq normalization
updated 2.9 years ago by 19k • written 2.9 years ago by ▴ 240
8
votes
4
replies
1.0k
views
Pathway analysis of a list of possible cancer driver genes
pathway analysis cancer driver genes
updated 3.3 years ago by 87k • written 3.3 years ago by ▴ 240
3
votes
2
replies
4.7k
views
Include gene ontology codes in the plots generated using the enrochplot package
functional enrichment analysis gsea enrichplot
updated 3.3 years ago by 82k • written 3.3 years ago by ▴ 240
0
votes
1
reply
1.0k
views
Types of base substitutions
genome SNP
3.4 years ago by Gene_MMP8 ▴ 240
1
vote
2
replies
2.9k
views
How to run bedtools from inside a python program
bedtools python commandline
updated 3.5 years ago by 21k • written 3.5 years ago by ▴ 240
8
votes
6
replies
2.5k
views
Batch effect removal with the help of sva
SVA batch-effect gene-expression
updated 15 days ago by 43k • written 3.5 years ago by ▴ 240
0
votes
0
replies
705
views
Feature extraction pipeline for CHASMplus
CHASMplus
3.6 years ago by Gene_MMP8 ▴ 240
2
votes
3
replies
1.1k
views
Convert variant coordinates from one genome build to the other
sequence variant genome_build
3.6 years ago by Gene_MMP8 ▴ 240
1
vote
3
replies
770
views
Conserved regions around mutations
next-gen sequencing
3.7 years ago by Gene_MMP8 ▴ 240
3
votes
1
reply
1.3k
views
Effect of sample size on log fold change in gene expression analysis
RNA-Seq R
updated 3.9 years ago by ★ 5.8k • written 3.9 years ago by ▴ 240
1
vote
1
reply
600
views
Amino acid substitution to nucleotide substitution conversion
R sequencing
4.0 years ago by Gene_MMP8 ▴ 240
1
vote
1
reply
677
views
Similarity between DNA strings of two different classes
sequencing similarity
4.0 years ago by Gene_MMP8 ▴ 240
1
vote
2
replies
755
views
scRNA data for human muscle cells
RNA-Seq scRNA machinelearning
4.1 years ago by Gene_MMP8 ▴ 240
6
votes
9
replies
1.3k
views
How to download passenger mutations for cancer
passenger mutations driver mutations cancer
updated 4.1 years ago by ▴ 1000 • written 4.1 years ago by ▴ 240
0
votes
0
replies
763
views
Unable to understand the input to the tablemaker tool
RNA-Seq software error
4.2 years ago by Gene_MMP8 ▴ 240
0
votes
0
replies
557
views
Common bioinformatics tools required to analyze the mutational distribution in mice genomes
genome next-gen
4.4 years ago by Gene_MMP8 ▴ 240
3
votes
5
replies
1.2k
views
Estimate gene expression data
gene
updated 4.4 years ago by 20 • written 5.1 years ago by ▴ 240
5
votes
6
replies
874
views
Mutation calling for pediatric cancer data
SNP Assembly
4.4 years ago by Gene_MMP8 ▴ 240
1
vote
2
replies
1.0k
views
Machine learning using microarray data
RNA-Seq machinelearning
updated 4.5 years ago by 8.2k • written 4.5 years ago by ▴ 240
5
votes
1
reply
1.4k
views
Machine learning using microarray data
RNA-Seq R
updated 4.5 years ago by ★ 5.8k • written 4.5 years ago by ▴ 240
0
votes
1
reply
719
views
Default strand of mutations
genome
4.5 years ago by Gene_MMP8 ▴ 240
3
votes
1
reply
675
views
Distribution of mutations in different parts of the genome
genome
updated 4.6 years ago by 7.1k • written 4.6 years ago by ▴ 240
3
votes
4
replies
1.4k
views
Problems downloading MuSiC
software error MuSiC
written 5.7 years ago by ▴ 240
1
vote
1
reply
865
views
Strand information for reference genome
sequencing Assembly
updated 4.7 years ago by 47k • written 4.7 years ago by ▴ 240
8
votes
2
replies
2.9k
views
Confusion with fold change cutoff
R RNA-Seq
updated 4.7 years ago by 82k • written 4.7 years ago by ▴ 240
3
votes
8
replies
3.3k
views
Remove duplicate genes with lower significance in microarray data analysis
R limma microarray RNA-Seq
updated 4.7 years ago by ★ 2.0k • written 4.7 years ago by ▴ 240
0
votes
2
replies
1.1k
views
MIcroarray data analysis using limma
R limma software error
4.7 years ago by Gene_MMP8 ▴ 240
0
votes
0
replies
563
views
Control-disease pair study design
R
4.7 years ago by Gene_MMP8 ▴ 240
4
votes
6
replies
1.1k
views
Number of driver mutation required to call a gene driver
cancer drivermutation
updated 4.8 years ago by 87k • written 4.8 years ago by ▴ 240
1
vote
2
replies
1.2k
views
Drug targets for hub genes
RNA-Seq R
4.8 years ago by Gene_MMP8 ▴ 240
5
votes
3
replies
964
views
PCA-based clustering gene expression data
RNA-Seq R
updated 4.8 years ago by 87k • written 4.8 years ago by ▴ 240
3
votes
8
replies
1.2k
views
Driver mutation detection benchamrk
drivermutation benchmarking
updated 4.8 years ago by 8.2k • written 4.8 years ago by ▴ 240
5
votes
5
replies
11k
views
How to plot gene expression heatmap based on groups in R
RNA-Seq R
4.8 years ago by Gene_MMP8 ▴ 240
0
votes
2
replies
1.8k
views
Error while trying ANNOVAR
annovar
4.8 years ago by Gene_MMP8 ▴ 240
4
votes
4
replies
1.1k
views
Wrong results in differential gene expression analysis
RNA-Seq
updated 10 months ago by 43k • written 4.9 years ago by ▴ 240
107 results • Page 1 of 3
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