User: shangzhenhua08

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Posts by shangzhenhua08

<prev • 6 results • page 1 of 1 • next >
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Comment: C: How to install SNAP2 in Debian or Ubuntu
... The problem is that I can not install SNAP2 successfully in Debian or Ubuntu. Anyone used it before? ...
written 25 days ago by shangzhenhua080
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How to install SNAP2 in Debian or Ubuntu
... Hi, I have a list of missense SNPs from CDS of Peromyscus, and I am trying to predict the impact of single amino acid substitution on protein function. Have any of you tried SNAP2 command line from Rostlab? Since this is a large list, web server is not feasible. I have some difficulties installing S ...
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(Closed) how to find out protein changes from SNPs
... I already got VCF files with annotated SNPs, but I also need to know whether protein structure changes or not. Any tools recommended? ...
genome sequence next-gen snp written 8 weeks ago by shangzhenhua080
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(Closed) snps causing protein change
... I have one VCF file which contain SNPs calls with annotation. Currently, I am trying to figure out how to detect SNPs changing protein structure. Any tools are recommended? Thank you so much. ...
snp written 8 weeks ago by shangzhenhua080
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Comment: C: DADA2/R Programmer Needed for One-Time Job
... Hi, I am very happy to help you. May u leave your email? ...
written 7 months ago by shangzhenhua080
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freebayes issue for BAM file
... Hi, I am doing variant allele discovery via freebayes. However, I always got Opened BAM reader without index file, jumping is disabled. could not find SM: in @RG tag @RG ID:FASTQ_Groomer_on_data_1. Can anybody help me to figure it out? ...
software error snp sequencing written 3.2 years ago by shangzhenhua080 • updated 3.2 years ago by Pierre Lindenbaum128k

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Popular Question 8 months ago, created a question with more than 1,000 views. For freebayes issue for BAM file

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