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questions
0
votes
0
replies
574
views
How to create link file from NUCmer output
nucmer
3.1 years ago by
agata88
▴ 870
2
votes
1
reply
2.6k
views
BOLD systems database for qiime?
qiime
BOLD
updated 3.1 years ago by
Biostar
20 • written 7.4 years ago by
agata88
▴ 870
0
votes
4
replies
1.3k
views
dotplot for multifasta files
dotplot
multifasta
3.1 years ago by
agata88
▴ 870
3
votes
5
replies
1.6k
views
Clustering sequences with low identity
clustering
sequences
updated 3.2 years ago by
Mensur Dlakic
★ 27k • written 3.2 years ago by
agata88
▴ 870
3
votes
3
replies
1.9k
views
How to download FASTA protein sequences for Escherichia coli strains from Ensembl?
ensembl
ensembl rest api
bacteria
sequence
updated 4.2 years ago by
Ben_Ensembl
★ 2.4k • written 4.2 years ago by
agata88
▴ 870
1
vote
2
replies
1.0k
views
Tools for detection of surface proteins in bacteria
proteins
bacteria
updated 4.2 years ago by
kapsakcj
▴ 90 • written 4.2 years ago by
agata88
▴ 870
7
votes
12
replies
3.0k
views
8 follow
Pseudogenes in bacteria genome
pseudogenes
updated 4.2 years ago by
Fatima
▴ 1000 • written 5.7 years ago by
agata88
▴ 870
0
votes
3
replies
767
views
Multiple genome comparison for new genetic markers
markers
4.5 years ago by
agata88
▴ 870
0
votes
2
replies
1.1k
views
Qiime2 - make table.gza
qiime2
4.6 years ago by
agata88
▴ 870
0
votes
2
replies
3.0k
views
plotTracks - empty plot and custom genomes
r
Gviz
updated 4.7 years ago by
benformatics
3.9k • written 4.7 years ago by
agata88
▴ 870
0
votes
1
reply
921
views
What tool for compound management?
drugs
compound
management
4.9 years ago by
agata88
▴ 870
4
votes
6
replies
1.2k
views
are known polymorphisms in the primer sequence?
primer
polymorphisms
5.2 years ago by
agata88
▴ 870
4
votes
8
replies
2.2k
views
RNAseq computer source for TopHat and Cufflinks
Cufflinks
RNAseq
updated 5.6 years ago by
Charles Warden
8.2k • written 5.6 years ago by
agata88
▴ 870
2
votes
4
replies
2.0k
views
Removing contaminants from 16S data
16S
updated 5.6 years ago by
WouterDeCoster
47k • written 5.6 years ago by
agata88
▴ 870
3
votes
9
replies
2.0k
views
Fill gaps in scaffolds
scaffolds
gaps
5.6 years ago by
agata88
▴ 870
2
votes
5
replies
1.8k
views
Order of contigs
contigs
updated 5.6 years ago by
piet
★ 1.8k • written 5.6 years ago by
agata88
▴ 870
0
votes
1
reply
2.0k
views
Reordering contigs of circular genome
mauve
5.7 years ago by
agata88
▴ 870
1
vote
6
replies
3.6k
views
Prokka bacteria genome annotation
prokka
5.7 years ago by
agata88
▴ 870
2
votes
3
replies
3.2k
views
get bacteria data from NT database
ncbi
nt
updated 5.7 years ago by
GenoMax
141k • written 5.7 years ago by
agata88
▴ 870
3
votes
5
replies
2.1k
views
BWA gives wrong number of input sequences
bwa
updated 5.7 years ago by
swbarnes2
14k • written 5.7 years ago by
agata88
▴ 870
3
votes
5
replies
1.7k
views
Pipeline for de novo analysis of bacteria genome
bacteria
genome
5.7 years ago by
agata88
▴ 870
10
votes
10
replies
16k
views
BWA or STAR for RNAseq?
RNA-Seq
5.7 years ago by
agata88
▴ 870
0
votes
8
replies
2.2k
views
interproscan empty output
interproscan
5.7 years ago by
agata88
▴ 870
0
votes
0
replies
1.5k
views
Super Transcripts approach
SuperTranscripts
RNAseq
5.8 years ago by
agata88
▴ 870
3
votes
3
replies
2.3k
views
local blastx output
blastx
5.8 years ago by
agata88
▴ 870
1
vote
2
replies
921
views
Protists homology analysis
protists
homology
updated 5.8 years ago by
h.mon
35k • written 5.8 years ago by
agata88
▴ 870
1
vote
2
replies
1.5k
views
De novo RNAseq analyses
RNAseq
de novo
updated 5.8 years ago by
h.mon
35k • written 5.8 years ago by
agata88
▴ 870
0
votes
1
reply
1.1k
views
Demultiplex of V4 reads
miseq
demultiplex
16S
updated 5.8 years ago by
h.mon
35k • written 5.8 years ago by
agata88
▴ 870
0
votes
1
reply
1.5k
views
HMP database, how to process 16S data?
HMP
16S
454
updated 5.9 years ago by
Biostar
20 • written 6.0 years ago by
agata88
▴ 870
0
votes
4
replies
1.5k
views
Good quality mock community?
16S
mock
updated 6.1 years ago by
Sunguk
• 0 • written 6.5 years ago by
agata88
▴ 870
2
votes
6
replies
2.3k
views
Comparison of SNPs between groups of samples
SNP
updated 6.1 years ago by
Pierre Lindenbaum
161k • written 6.1 years ago by
agata88
▴ 870
5
votes
6
replies
1.3k
views
How can I predict the time of calculations for RNAseq?
RNA-Seq
updated 6.2 years ago by
Arup Ghosh
3.2k • written 6.4 years ago by
agata88
▴ 870
3
votes
5
replies
6.0k
views
buffer error bwa
bwa
updated 6.3 years ago by
Biostar
20 • written 7.0 years ago by
agata88
▴ 870
5
votes
16
replies
2.6k
views
a lot of OTUs wth no reference
16S
6.5 years ago by
agata88
▴ 870
0
votes
1
reply
3.0k
views
How reads are divided into taxonomy level in Qiime?
qiime
16S
updated 6.5 years ago by
BioinfGuru
★ 1.7k • written 6.5 years ago by
agata88
▴ 870
7
votes
5
replies
4.4k
views
Where can I find a list of pathogens and disease?
bacteria
pathogen
updated 6.8 years ago by
Andrzej Zielezinski
11k • written 6.8 years ago by
agata88
▴ 870
0
votes
6
replies
1.5k
views
Metagenome 16S reference
16S
Qiime
6.8 years ago by
agata88
▴ 870
0
votes
4
replies
1.6k
views
EBI-metagenome - Unequal number of reads in introduction and taxonomy
metagenom
16S
EBI
updated 6.8 years ago by
Istvan Albert
100k • written 6.8 years ago by
agata88
▴ 870
0
votes
2
replies
2.5k
views
How to detect poliploidy or aneuploidy in yeasts?
yeasts
ngs
genotyping
bcftools
updated 6.8 years ago by
Wayne
★ 2.0k • written 8.1 years ago by
agata88
▴ 870
0
votes
5
replies
2.5k
views
Scalpel Error - INDELS
scalpel
indel
updated 6.9 years ago by
sydaileen
• 0 • written 8.0 years ago by
agata88
▴ 870
1
vote
2
replies
1.1k
views
public data of RNA-seq
RNA-Seq
6.9 years ago by
agata88
▴ 870
3
votes
11
replies
2.3k
views
1000g database with wrong variant annotation?
1000g
6.9 years ago by
agata88
▴ 870
0
votes
0
replies
1.7k
views
How to get depth for SNP or indel in vcf file?
vcf
7.0 years ago by
agata88
▴ 870
0
votes
10
replies
1.9k
views
Which tool for detection of VNTR?
VNTR
microsatelites
minisatelites
7.0 years ago by
agata88
▴ 870
0
votes
0
replies
1.3k
views
panelcn.MOPS description of methodology
CNVs
7.0 years ago by
agata88
▴ 870
2
votes
1
reply
1.5k
views
How to download SRA files according to Project ID?
Human Microbiome Project
7.1 years ago by
agata88
▴ 870
1
vote
7
replies
5.7k
views
How to create scaffolds from contigs?
de novo
7.1 years ago by
agata88
▴ 870
1
vote
4
replies
2.4k
views
How to use qiime group_significance.py script?
qiime
7.2 years ago by
agata88
▴ 870
2
votes
3
replies
18k
views
NCBI nr database
ncbi
updated 7.2 years ago by
Hajk-Georg Drost
▴ 160 • written 7.2 years ago by
agata88
▴ 870
0
votes
3
replies
1.4k
views
Yeasts references SGD and Ensembl
yeast
ngs
updated 7.2 years ago by
Denise CS
★ 5.2k • written 7.2 years ago by
agata88
▴ 870
92 results • Page
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