User: Helder Gomes

gravatar for Helder Gomes
Helder Gomes10
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10
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New User
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Last seen:
3 years, 8 months ago
Joined:
3 years, 9 months ago
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h**************@gmail.com

Posts by Helder Gomes

<prev • 7 results • page 1 of 1 • next >
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Comment: C: Retrieve a large dataset of biological sequences with Perl
... Thanks mxs. It works great! ...
written 3.7 years ago by Helder Gomes10
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Retrieve a large dataset of biological sequences with Perl
... Hi.  I am trying a Perl script from NCBI´s EUtils to retrieve a large dataset of sequences of the microbiome of Xestospongia testudinaria. use LWP::Simple; use warnings; # Download FASTA records linked to xestospongia testudinaria on Nucleotide. $db1 = 'pubmed'; $db2 = 'nuccore'; $linkname = 'pub ...
ncbi perl sequence written 3.7 years ago by Helder Gomes10
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Comment: C: Retrieving of all the sequences of a microbiome
... Thanks Daniel. As I've just answered a.polo I am trying to run a Perl script that is almost working. If I don't manage to get the dataset I'll try QIITA. ...
written 3.7 years ago by Helder Gomes10
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Comment: C: Retrieving of all the sequences of a microbiome
... There are still to many sequences to run each one on BLAST. I am trying to run a script on Perl that is almost working. I am managing to retrieve the sequences... i am just not managing to get them on a document. Thanks! ...
written 3.7 years ago by Helder Gomes10
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Comment: C: Retrieving of all the sequences of a microbiome
... Thanks QVINTVS_FABIVS_MAXIMVS. I don't need an actual database... 'just' the complete set of sequences of all of the microorganisms found in X. testudinaria. I've download the BLAST microbial 16S database through Perl. I'll start there. ...
written 3.7 years ago by Helder Gomes10
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Comment: C: Retrieving of all the sequences of a microbiome
... Thanks a.polo88 but i've tried that way. The problem is that when I try a more focused search (http://www.ncbi.nlm.nih.gov/gquery/?term=xestospongia+testudinaria) I end up with a very limited number of sequences actually belonging to the microbiome.   ...
written 3.7 years ago by Helder Gomes10
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Retrieving of all the sequences of a microbiome
... Hi! I need to retrieve ALL the sequences of the microbiome of a specific organism (X. testudinaria). What do you think is the best way? ...
ncbi sequence written 3.7 years ago by Helder Gomes10 • updated 3.7 years ago by Daniel3.7k

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