User: shinken123

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shinken123100
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México
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Posts by shinken123

<prev • 51 results • page 1 of 6 • next >
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Comment: C: how is obtained the BED score values (the 5th column of the bed files) in BED fi
... Hi, this is not clear to me. If the file is a bam file. Is the score the number of reads in the interval? ...
written 12 days ago by shinken123100
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Comment: C: Fast LD computation from VCF files using tomahawk
... Can someone please tell me if there is a paper about tomahawk? ...
written 5 months ago by shinken123100
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Comment: A: Call CNVs using gene positions
... I added more info. Thanks. ...
written 12 months ago by shinken123100
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Call CNVs using gene positions
... Hi Everyone, I am wondering if someone knows a method to call CNVs only on specified positions. Maybe using a software that allows to include a bed file with gene positions or any other regions of interest. This, using whole-genome Illumina pair-end sequencing data aligned against a reference genom ...
read depth cnvs sequencing written 12 months ago by shinken123100 • updated 11 months ago by Biostar ♦♦ 20
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Comment: C: What is an illumina technical sequence?
... Thanks. I am asking this because is very clear what is an adapter, but I can not find the definition anywhere for a technical sequence. Cheers ...
written 20 months ago by shinken123100
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(Closed) What is an illumina technical sequence?
... Hi all, I am using trimmomatic and in their manual [here](http://www.usadellab.org/cms/?page=trimmomatic) they mention adapters and technical sequences.Could some one please tell me what is a technical sequence? I can not find info about this. Thank you in advance. ...
sequencing written 20 months ago by shinken123100
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Haploview Skipping block output: no valid blocks error
... Hi all, I am runnig haploview https://www.broadinstitute.org/haploview/haploview and I am having the next output: ***************************************************** Haploview 4.2 Java Version: 1.8.0_201 ***************************************************** Arguments: -nogui -pedfile ...
software error snp written 20 months ago by shinken123100
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Answer: A: Haploview error (Hapmap data format error)
... At the end I upload my file in to TASSEL in hapmap format, I convert it to plink format using TASSEL, then I change the -9 for 0 using seed, then Haploview was able to read this data. I hope that this could help some one. ...
written 20 months ago by shinken123100
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Comment: C: Haploview error (Hapmap data format error)
... I have exactly the same problem, did you figure out how to solve it? ...
written 21 months ago by shinken123100
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Haplotype visualization from postion data
... Hi all, I have haplotypes from which I could extract their position (chromosome, start, end) and add a colour. Using this info there is a software that coudl help me to visualize the haplotypes? Best Wishes, Eric ...
genome sequence snp written 21 months ago by shinken123100 • updated 20 months ago by Biostar ♦♦ 20

Latest awards to shinken123

Popular Question 5 months ago, created a question with more than 1,000 views. For how to remove sequences form a QUAL file using a list of IDs
Popular Question 20 months ago, created a question with more than 1,000 views. For mapping quality for sanger reads
Popular Question 20 months ago, created a question with more than 1,000 views. For how to remove sequences form a QUAL file using a list of IDs
Popular Question 20 months ago, created a question with more than 1,000 views. For chain file for maize
Popular Question 20 months ago, created a question with more than 1,000 views. For mapping quality for sanger reads
Popular Question 2.1 years ago, created a question with more than 1,000 views. For mapping quality for sanger reads
Popular Question 2.1 years ago, created a question with more than 1,000 views. For Remove a list of positions form a VCF file
Popular Question 2.2 years ago, created a question with more than 1,000 views. For vcf-merge is giving me a few SNPs in the merged vcf file
Popular Question 2.3 years ago, created a question with more than 1,000 views. For GBS SNPs calling
Popular Question 2.5 years ago, created a question with more than 1,000 views. For vcf-merge is giving me a few SNPs in the merged vcf file
Teacher 3.2 years ago, created an answer with at least 3 up-votes. For A: Obtaining the top matches from blast

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