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0
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1.0k
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Bedtools genomecov option to keep columns 4-6?
genomecov bed bedtools
updated 18 months ago by • 0 • written 3.9 years ago by ▴ 710
1
vote
1
reply
700
views
A regex to convert operon names to genes?
regex r gene operon
updated 2.6 years ago by ★ 2.5k • written 2.6 years ago by ▴ 710
4
votes
7
replies
2.1k
views
can't run Aracne -- Java error
aracne RNA-Seq network
updated 2.8 years ago by ▴ 730 • written 3.7 years ago by ▴ 710
1
vote
7
replies
3.7k
views
Using the Homer suite with conda
homer conda bioconda
updated 3.2 years ago by 20 • written 6.9 years ago by ▴ 710
0
votes
3
replies
1.8k
views
Generate sequence alignment and heatmap for TF binding sites
alignment ChIP-Seq logo heatmap
updated 4.1 years ago by 10k • written 4.1 years ago by ▴ 710
1
vote
10
replies
3.6k
views
Building sequence logo from uneven sequences
logo alignment fasta ggseqlogo weblogo
4.9 years ago by rioualen ▴ 710
60
votes
12
replies
42k
views
10 follow
Get chromosome sizes from fasta file
genome ucsc
updated 17 months ago by • 0 • written 8.2 years ago by ▴ 710
3
votes
2
replies
2.9k
views
Download data from GEO/SRA using link
sra fastq geo
updated 5.0 years ago by 141k • written 5.0 years ago by ▴ 710
1
vote
4
replies
1.9k
views
Bedtools window: getting feature from bedfile instead of GFF3 file
bedtools window
updated 6.3 years ago by 35k • written 6.3 years ago by ▴ 710
3
votes
2
replies
2.3k
views
GC content biases in RNA-seq data of A.thaliana
RNA-Seq GC Athaliana mapping
6.5 years ago by rioualen ▴ 710
14
votes
8
replies
12k
views
Extract basic info from fastq files in an efficient way?
fastq fastqc
updated 6.6 years ago by 35k • written 6.6 years ago by ▴ 710
10
votes
11
replies
4.0k
views
"Segmentation fault (core dumped)" using sickle for trimming, depending on options used
trimming sickle virtual-machine
6.6 years ago by rioualen ▴ 710
7
votes
4
replies
3.8k
views
Merge bed files, keep the peak count
bedtools bedops ChIP-Seq
updated 6.8 years ago by 20 • written 7.8 years ago by ▴ 710
19
votes
16
replies
13k
views
6 follow
Differences between trimming tools: cutadapt, bbduk and sickle
sickle cutadapt trimming bbduk
7.0 years ago by rioualen ▴ 710
2
votes
2
replies
3.2k
views
How to remove adaptors if you don't know their names/sequences? (eg from public data)
adaptors ngs trimming cutadapt trimmomatic
updated 7.0 years ago by ★ 5.2k • written 7.0 years ago by ▴ 710
0
votes
0
replies
2.8k
views
Get fastq/sra from ArrayExpress and/or GEO programmatically for specific organism/experiment type
arrayexpress fastq sra geo
7.3 years ago by rioualen ▴ 710
1
vote
6
replies
2.3k
views
sra to fastq conversion - paired-end file won't split
fastq sra fastq-dump sratoolkit
7.3 years ago by rioualen ▴ 710
1
vote
4
replies
2.2k
views
Is there a simple way to get the max coverage of a bedgraph file in python?
python bedgraph
updated 8.1 years ago by 35k • written 8.1 years ago by ▴ 710
7
votes
10
replies
3.6k
views
Looking for ways to download ChIP-seq datasets programmatically in a pipeline
GEO ChIP-Seq next-gen
updated 8.3 years ago by 7.8k • written 8.3 years ago by ▴ 710
2
votes
3
replies
2.0k
views
Get chromosome name from RefSeq format for C.elegans
ChIP-Seq Refseq
8.7 years ago by rioualen ▴ 710
20 results • Page 1 of 1
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