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Unexpected discrepancy between Ka/Ks (seqinr) and dn/ds (ape)
dnds sequence-analysis KaKS R
14 months ago by Fabio Marroni ★ 3.0k
4
votes
4
replies
3.9k
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Retrieving phytozome data using the R bioconductor package biomaRt
R bioconductor phytozome biomart biomaRt
updated 2.7 years ago by ★ 2.0k • written 6.6 years ago by ★ 3.0k
1
vote
0
replies
1.8k
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Help in interpreting result of magic-blast on nt database
magic-blast sam nt alignment paired-reads
4.9 years ago by Fabio Marroni ★ 3.0k
1
vote
0
replies
1.9k
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Nucmer and delta-filter not symmetric for reference and query
nucmer alignment multifasta
6.1 years ago by Fabio Marroni ★ 3.0k
4
votes
2
replies
4.4k
views
topGO is performing enrichment test on GO terms that are not present in my dataset
topGO gene ontology bioconductor R
updated 6.2 years ago by ▴ 20 • written 6.3 years ago by ★ 3.0k
0
votes
0
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1.7k
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Use of makeSPIAdata function from SPIA on non human organisms
Bioconductor R KEGG
7.4 years ago by Fabio Marroni ★ 3.0k
1
vote
0
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1.8k
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GATK calls two overlapping homozyogous indels in consecutive bases in a single sample
GATK indels variants
7.6 years ago by Fabio Marroni ★ 3.0k
17
votes
7
replies
23k
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Bwa-Mem: Discriminate Between Reads Mapping Uniquely And Those Mapping In Multiple Positions
alignment next-gen bwa
updated 8.6 years ago by 20 • written 10.8 years ago by ★ 3.0k
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