User: Eitan Rubin

gravatar for Eitan Rubin
Eitan Rubin30
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8 years, 3 months ago
Joined:
8 years, 6 months ago
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e*****@bgu.ac.il

Posts by Eitan Rubin

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Answer: A: Detecting Polyploidy Using An Assembly
... In plants, there are works suggesting that polyploidization is accompanied by rapid accumulation of mutations (look up Avi Levy's work). So it should be possible to find multiple alleles - heterozygocity for SNPs + indels Look up Avi Levy's work from the Weizmann Institute of Science (he worked on w ...
written 8.3 years ago by Eitan Rubin30
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Answer: A: From Compressed Bam To Fastq
... I checked out the recommendation to use picard or Hydra to convert BAM to Fastq. Works great UNLESS YOU USED THE -calmd -e OPTION OF SAMTOOLS. In this case, picard complaints that it sees an illegitimate base '=', and hydra happily creates fastq sequences made almost entirely of '=' charaters :( ...
written 8.5 years ago by Eitan Rubin30

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