User: 2351688559

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235168855910
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China
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Posts by 2351688559

<prev • 21 results • page 1 of 3 • next >
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Comment: C: What does the "N" column mean of the TBLASTX output?
... ![enter image description here][1]! it is like this: [1]: https://i.imgur.com/aL5M8fb.png ...
written 10 days ago by 235168855910
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What does the "N" column mean of the TBLASTX output?
... Dear all, When I use TBLASTX, I found the result gives an additional column "N", which never appears if using other programs. I really don't know what it means....I even wounder, if this really meaningful? Would any one tell me what it is? Thank you!! ...
tblastx blast written 10 days ago by 235168855910
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How would the border of the data be shown using Java TreeView?
... Dear all, I want to export some gene expression heatmaps using Java TreeView, and I want the borders of each expression data to be shown. I don't know how to achieve it, really need your help.. Also, could you tell me how to zoom in the gene tree with this software? The default view seems too den ...
java treeview written 5 months ago by 235168855910
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Comment: C: Why did not BLAST show the results that fit the my requirements?
... I wanted to search homologous of cryptochrome from Neurospora crassa in human's genome. Thus, I used the protein sequence of Neurospora's cryptochrome as the query, and proteins collection of human genome as the databse. All of the parameters were default, except the e value in the first search, whi ...
written 7 months ago by 235168855910
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Why did not BLAST show the results that fit the my requirements?
... Dear all. Recently, I did a BLAST search with e value of 1e-10 as the threshold. Then,by doing the same BLAST search without setting the threshold, I found some hits, of which the e value was below the threshold (1.6e-16), did not show up in the orginal search. Could you please tell me what happened ...
blast written 7 months ago by 235168855910
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Comment: C: How can I get Tabular output using HMMer
... Ok, I got the idea. Many thanks. ...
written 8 months ago by 235168855910
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How can I get Tabular output using HMMer
... Dear all, I want to use HMMer to search some sequences and I want a tabular output. The user guide told me to add "--tblout" within the command, and I did it, then, I got this result: Incorrect number of command line arguments. Usage: phmmer [-options] where basic options are: -h : show brief ...
hmmer written 8 months ago by 235168855910
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Comment: C: How to creat a phylogenetic tree for SPECIES?
... All conserved proteins. I'm afraid others may not work for the species I want to study. ...
written 18 months ago by 235168855910
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Comment: C: How to creat a phylogenetic tree for SPECIES?
... Actually I want to use their protein sequences, I think this will provide more accurate result. ...
written 18 months ago by 235168855910
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Comment: C: How to creat a phylogenetic tree for SPECIES?
... I heard one method called concatenated phylogenetic analysis of protein sequences, of which my undestanding is to do MSA for all protein sequences of homologous genes, and then combine and analyze the results of MSA to generate the phylogenetic tree. But I do not know how to do it or whether it work ...
written 18 months ago by 235168855910

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