User: marwa.cs91

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marwa.cs9120
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Egypt
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Posts by marwa.cs91

<prev • 25 results • page 1 of 3 • next >
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How to update kgp IDs to rs IDs for SNPs
... Hello all, how to update kgp IDs to rs IDs for SNPs typed on the illumina HumanOmni2.5M array. My dataset contain some SNPs with kgp IDs. I wonder whether there is an alternative way of doing this, as would like to update all the kgp markers in our sample to rs IDs. thanks in advance ...
snp written 2.4 years ago by marwa.cs9120 • updated 16 months ago by pietrobiroli0
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Comment: C: How can I know the appropriate p-value threshould?
... Thanks Jean-Karim for your detailed description and your time ...
written 2.4 years ago by marwa.cs9120
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Comment: C: How can I know the appropriate p-value threshould?
... Thanks Jean-Karim for your description . My dataset after quality control contains 1560242 SNPs but after using genome-wide significance(p < 5e -8) , the number of SNPs became very small . I tried bonferroni correction (0.05/total number of snps) but these threshold gave also very small number o ...
written 2.4 years ago by marwa.cs9120
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Comment: C: How can I know the appropriate p-value threshould?
... can I use the threshold FDR <0.05 Is it true ? thanks ...
written 2.4 years ago by marwa.cs9120
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Comment: C: How can I know the appropriate p-value threshould?
... Thanks for your important hint. I used plink --adjust command to know FDR significance values. How can I know the significance threshold of FDR? thanks ...
written 2.4 years ago by marwa.cs9120
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How can I know the appropriate p-value threshould?
... Hello all, I used a dataset of patients and normal individuals. This dataset contains 1560242 SNPs after quality control. I used the genome-wide significance (p < 5e -8). The number of SNPs after using the threshold (p < 5e -8) are very small. How can I use another proper threshold to get mo ...
p-value written 2.4 years ago by marwa.cs9120
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Comment: C: Functional annotation using seattle seq annotation tool
... I want to know examples of information that can be known by this tool. Can you tell me some examples Thanks ...
written 2.4 years ago by marwa.cs9120
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Functional annotation using seattle seq annotation tool
... Hello all, I am using a dataset about a disease. I want to use SeattleSeq tool to know the functional annotation of SNPs and the importance of the genes to the disease. How can I know these information using SeattleSeq? Thanks in advance ...
gene snp seattleseq written 2.4 years ago by marwa.cs9120 • updated 2.3 years ago by Biostar ♦♦ 20
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Answer: A: seattle seq annotation tool
... Thanks WouterDeCoster for your help ...
written 2.4 years ago by marwa.cs9120
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seattle seq annotation tool
... Hello all, I have a list of SNPs like(rs429358,rs2007332 and ......). How can I use seattle seq tool for SNPs annotation)? thanks in advance ...
annotation snp seattle seq written 2.4 years ago by marwa.cs9120

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