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2
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1.3k
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Answer: Answer: How to extract only the specific fasta sequences by matching the ID's to a diff
3.0 years ago by Prakash ★ 2.2k
1
vote
1
reply
803
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Answer: A: Quantification of acetylation enriched regions at transcription factor binding s
3.5 years ago by Prakash ★ 2.2k
4
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0
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2.2k
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Answer: A: WGCNA "trait" file format?
3.5 years ago by Prakash ★ 2.2k
0
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0
replies
973
views
Answer: A: GoProfiler compareGeneLists Error
3.9 years ago by Prakash ★ 2.2k
2
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1
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2.1k
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Answer: A: How to cat fastq files but keep different samples separate
4.1 years ago by Prakash ★ 2.2k
3
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1
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1.3k
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Answer: C: MACS for a paired-end sequencing
4.1 years ago by Prakash ★ 2.2k
3
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0
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1.8k
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Answer: A: Correlation of two ChIP-seq signals?
4.3 years ago by Prakash ★ 2.2k
1
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0
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3.7k
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Answer: A: Cuffdiff for differential gene expression
updated 4.4 years ago by 43k • written 8.5 years ago by ★ 2.2k
3
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0
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824
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Answer: C: Chip seq coverage
4.5 years ago by Prakash ★ 2.2k
3
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0
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3.2k
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Answer: C: scale in R pheatmap
4.6 years ago by Prakash ★ 2.2k
4
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0
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3.6k
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Answer: A: Need help with simple FOR loop
4.6 years ago by Prakash ★ 2.2k
3
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0
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2.1k
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Answer: C: How to process RNA-seq data for a heatmap in R
4.6 years ago by Prakash ★ 2.2k
2
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1
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1.7k
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Answer: C: STRING does not support networks larger than 2000 nodes.
4.6 years ago by Prakash ★ 2.2k
3
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0
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928
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Answer: C: how to create a gene co-expression network?
4.7 years ago by Prakash ★ 2.2k
1
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0
replies
3.0k
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Answer: A: transformed read counts in deseq2
4.7 years ago by Prakash ★ 2.2k
9
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2
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14k
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Answer: A: Multiple plots outputs using for loop in R
4.8 years ago by Prakash ★ 2.2k
3
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2
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1.4k
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Answer: C: print non match to list lines of GTF file
4.9 years ago by Prakash ★ 2.2k
5
votes
1
reply
2.9k
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Answer: A: How to bin my count data for the entire genome?
4.9 years ago by Prakash ★ 2.2k
3
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0
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1.6k
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Answer: C: Construct a gene co-expression network with WGCNA
4.9 years ago by Prakash ★ 2.2k
3
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0
replies
3.0k
views
Answer: A: Gene expression profile analysis
5.0 years ago by Prakash ★ 2.2k
3
votes
1
reply
1.5k
views
Answer: C: How to assign the result of a command to a variable in shell script?
5.0 years ago by Prakash ★ 2.2k
6
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0
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5.0k
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Answer: A: How to filter low expressed genes based on TPM expression?
5.0 years ago by Prakash ★ 2.2k
2
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0
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2.8k
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Answer: C: venn plot data?
5.0 years ago by Prakash ★ 2.2k
3
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2
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5.2k
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Answer: A: Running GSEA for DEGs
5.0 years ago by Prakash ★ 2.2k
2
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0
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1.5k
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Answer: A: Overlap in Peaks of ChIP data for 2 TFs
5.0 years ago by Prakash ★ 2.2k
5
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2
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1.8k
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Answer: A: How can I find the promoter regions that have H3k27me3 in two different groups
5.0 years ago by Prakash ★ 2.2k
2
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0
replies
8.8k
views
Answer: A: How to highlight certain genes in a Volcano Plot in R
5.0 years ago by Prakash ★ 2.2k
5
votes
1
reply
1.3k
views
Answer: A: Filtering, Summerizing, and plotting from big data frame
5.2 years ago by Prakash ★ 2.2k
5
votes
1
reply
3.3k
views
Answer: A: Dividing the groups on the same axis using ggplot2
5.2 years ago by Prakash ★ 2.2k
16
votes
2
replies
18k
views
Answer: A: showing specific GO pathways in the dotplot or cnetplot
5.2 years ago by Prakash ★ 2.2k
3
votes
0
replies
15k
views
Answer: A: Tools To Do the Alternative Splicing Analysis
5.2 years ago by Prakash ★ 2.2k
2
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1
reply
1.3k
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Answer: C: Regular expression to extract mutations type
5.2 years ago by Prakash ★ 2.2k
5
votes
1
reply
1.8k
views
Answer: A: Delete numbers in the tables column
updated 5.6 years ago by 11k • written 5.6 years ago by ★ 2.2k
17
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0
replies
5.3k
views
Answer: A: How to add gene symbol to RNA-Seq data using R
5.6 years ago by Prakash ★ 2.2k
1
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0
replies
1.9k
views
Answer: A: How to extract gene IDs from a tabular file based on a list of locus tags?
5.6 years ago by Prakash ★ 2.2k
5
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2
replies
2.0k
views
Answer: A: How to add colors to bar chart?
updated 5.6 years ago by 141k • written 5.6 years ago by ★ 2.2k
0
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0
replies
1.9k
views
Answer: A: Can renaming, copying, or moving the omics data file corrupt it?
5.7 years ago by Prakash ★ 2.2k
1
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1
reply
2.0k
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Answer: A: Ranking of Bioinformatics tools & resources by the number of users
5.7 years ago by Prakash ★ 2.2k
0
votes
0
replies
1.1k
views
Answer: A: annotatePeaks.pl without annotation in genes name
5.7 years ago by Prakash ★ 2.2k
1
vote
1
reply
1.4k
views
Answer: A: Connect gene names to GO terms/function for loading in DESeq2
5.7 years ago by Prakash ★ 2.2k
1
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0
replies
2.5k
views
Answer: A: hierarchical clustering heat map to RNAseq data
5.7 years ago by Prakash ★ 2.2k
0
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0
replies
11k
views
Answer: A: How to convert transcript level TPM to gene level TPM ?
5.7 years ago by Prakash ★ 2.2k
1
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1
reply
4.0k
views
Answer: A: Delta z score between control and treatment
5.7 years ago by Prakash ★ 2.2k
1
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0
replies
15k
views
Answer: A: duplicate 'row.names' are not allowed
5.9 years ago by Prakash ★ 2.2k
0
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1
reply
6.6k
views
Answer: A: Picard MarkDuplicates flag vs remove issue
5.9 years ago by Prakash ★ 2.2k
1
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0
replies
2.2k
views
Answer: A: HOMER annotatePeaks.pl 'Unique Peak ID' in first column changed in output file
5.9 years ago by Prakash ★ 2.2k
0
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0
replies
1.2k
views
Answer: A: The chip-seq binding sites of POLR2B indicate the PoII pause there
6.1 years ago by Prakash ★ 2.2k
0
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3
replies
3.1k
views
Answer: A: how to subset sequences based on IDs, but order shall remain preserved?
6.2 years ago by Prakash ★ 2.2k
0
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0
replies
1.5k
views
Answer: A: What is my total number of genes in a hypergeometic distribution test?
6.3 years ago by Prakash ★ 2.2k
1
vote
0
replies
5.0k
views
Answer: A: Doing GSEA analysis on a set of genes
6.5 years ago by Prakash ★ 2.2k
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